View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5824_low_37 (Length: 269)
Name: NF5824_low_37
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 1510986 - 1511223
Alignment:
| Q |
18 |
agaagcctgaagtgaaacgcaaattctcaagtcaacctccttctcttctttggtttctttcttgtttgaataaaaa-gaatacaacatgaaactagttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1510986 |
agaagcctgaagtgaaacgcaaattctcaagtcaacctccttttcttctttggtttctttcttgtttgaataaaaaagaatacaacatgaaactagttga |
1511085 |
T |
|
| Q |
117 |
aaccgg--ataaatataactaacgcggtttaaaactttaaatcggtttaaaccaaaccaaaattgatttgagaaattgactggtttttattaaaatggtt |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
1511086 |
aaccggggataaatataactaacgcggtttaaaactttaaatcggtttaaaccaaaccaaaattgatttgagaaattaacaggtttttattaaaatagtt |
1511185 |
T |
|
| Q |
215 |
tttgagaactgaaccaaacgaaccctaattgtgattca |
252 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
1511186 |
tttgagaactgaaccaaacggaccctaaatgtgattca |
1511223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 44198471 - 44198507
Alignment:
| Q |
198 |
tttttattaaaatggtttttgagaactgaaccaaacg |
234 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| |
|
|
| T |
44198471 |
tttttattaaaatggtttttaaaaactgaaccaaacg |
44198507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University