View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_38 (Length: 258)
Name: NF5824_low_38
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 158
Target Start/End: Complemental strand, 14540415 - 14540276
Alignment:
| Q |
19 |
agaaacaagaaagtctataaatagttgtggaattcatcggttccatcaaaattcatcattcatggaagatgagttctgcagggcagaattgcttcaacga |
118 |
Q |
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| T |
14540415 |
agaaataagaaagcctataaatagttgtggaattcatcggttccatcaaaattcatcattcatggaagatgagttctgcaaggcagaattgcttcgacga |
14540316 |
T |
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| Q |
119 |
aagccttaaaacgaagatgtattgtagttaattgtgaagt |
158 |
Q |
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| T |
14540315 |
aagccttaaaacgaaggtgtattgtagctaattgtgaagt |
14540276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 14541959 - 14541738
Alignment:
| Q |
19 |
agaaacaagaaagtctataaatagttgtggaattcatcggttccatcaaaattcatcattcatggaagatgagttctgcagggcagaattgcttcaacga |
118 |
Q |
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|||||| |||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||| | ||||||||||||| |||||||||| |||| |
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| T |
14541959 |
agaaacgagaaagcctataaatagttatggaattcatcggttccattgaaattcatcattcgtggatggcaagttctgcagggctgaattgcttcgacga |
14541860 |
T |
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| Q |
119 |
aagccttaaaacgaagatgtattgtagttaattgtgaagttattccttgtgtgtttggtttggaagccgcggaggaatgccgacatattagtgatatgga |
218 |
Q |
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| T |
14541859 |
aggccttaaaacgaaggtgtattgtagctaattgtgaggtaattccttgtgtgtttggttcggaagccgcata-gaatgcagccatatcagtgatatgga |
14541761 |
T |
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| Q |
219 |
ctcttaaggacaacaaggaataag |
242 |
Q |
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| T |
14541760 |
ctctt-aggagagcaaggaataag |
14541738 |
T |
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