View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_39 (Length: 254)
Name: NF5824_low_39
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_39 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 140 - 254
Target Start/End: Complemental strand, 31786886 - 31786772
Alignment:
| Q |
140 |
caatcagtagaataaatatgtgtgtgtattggtgtattttaaacttttgtttttgagtgagttggttcgtatgtaacatatcttatcacctcatgtatct |
239 |
Q |
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| T |
31786886 |
caatcagtagaataaatgtgtgtgtgtattgatgtattttaaacttttgtttttgagtgagttggttcgtatgtaacatatcttatcacctcatgtatct |
31786787 |
T |
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| Q |
240 |
atatatgaggtgtat |
254 |
Q |
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| T |
31786786 |
atatatgaggtgtat |
31786772 |
T |
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Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 31787019 - 31786935
Alignment:
| Q |
7 |
gtgagaagaaagggatcatggagaagattaaggagaagcttcctggtaccggatcatgtactggacatggacaaggacactagac |
91 |
Q |
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| T |
31787019 |
gtgagaagaaagggatcatggagaagattaaggagaagcttcctggtaccggatcatgtactggacatggacaaggacactagac |
31786935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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