View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5824_low_4 (Length: 711)
Name: NF5824_low_4
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-107; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 1759474 - 1759708
Alignment:
| Q |
19 |
actttagtttcttaccttcaaaagatttttacttttcttgttacttgaatgtaaaacttcatatttctataattcttctctgattatctagcattgcaga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1759474 |
actttagtttcttaccttcaaaagatttttacttttcttgttacttggatgtaaaacttcatatttctataattcttctctgattatctagcattgcaga |
1759573 |
T |
|
| Q |
119 |
atgaccaaaattttcatctttaataagagcccttctaggactgcagggtcattttcagacttaatcccatacttcaaacttcnnnnnnnattacaccaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
1759574 |
atgaccaaaattttcatctttaataagagcccttctaggactgcagggtcattttcagacttaagcccatacttcaaacttctttttttattacaccaac |
1759673 |
T |
|
| Q |
219 |
cgataatataagttgaattttaaaacacacaattg |
253 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
1759674 |
tgataatataagttaaattttaaaacacacaattg |
1759708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 457 - 674
Target Start/End: Original strand, 1759912 - 1760136
Alignment:
| Q |
457 |
cttatccaatgccccaagcattcaccttttgttaaatataaagaagaaaacagaagcaacagagagcggaagaggaagagagtaagaaagttggttcat- |
555 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1759912 |
cttatccaatgccccaagcattctccttttgttaaatataaagaagaaaacaaaagcaacagagagcggaagaggaagagagtaagaaagttggttcatc |
1760011 |
T |
|
| Q |
556 |
------ttttccaaataacaacaaagaagggaaagatgaaaattagaacaagaacaaagagaaaaatttggattcaaggtctttttcatgtttattttgc |
649 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1760012 |
atctggttttccaaataacaacaaagaagagaaagatgaaaattagaacaagaacaaagagaaaaatttggattcaaggtctttttcatgtttattttgc |
1760111 |
T |
|
| Q |
650 |
aagagaaaatttgctacttcacagg |
674 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
1760112 |
aagagaaaatttactacttcacagg |
1760136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 669
Target Start/End: Original strand, 1738973 - 1739080
Alignment:
| Q |
556 |
ttttccaaataacaacaaagaagggaaagatgaaaattagaacaagaacaaagagaaaaatttggattcaaggtctttttcatgtttattttgcaagaga |
655 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||| | |||||||| ||||||||||| |||||||||| |||||||||||| || |
|
|
| T |
1738973 |
ttttccaaataacaacaataaagggaaagatga------gaacaagaatgaggagaaaaaaatggattcaaggactttttcatgcttattttgcaaggga |
1739066 |
T |
|
| Q |
656 |
aaatttgctacttc |
669 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
1739067 |
aaattttctacttc |
1739080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 606 - 672
Target Start/End: Original strand, 1744360 - 1744426
Alignment:
| Q |
606 |
aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcaca |
672 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||| |||||||| |||||||||| |
|
|
| T |
1744360 |
aagagaaaaaaatggattcaaggtctttttcatgcttattttgcaagggaaaattttctacttcaca |
1744426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 626 - 674
Target Start/End: Original strand, 1724448 - 1724496
Alignment:
| Q |
626 |
aggtctttttcatgtttattttgcaagagaaaatttgctacttcacagg |
674 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
1724448 |
aggtctttttcatgcttattttgcaagagaaaattttctacttcacagg |
1724496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 331 - 385
Target Start/End: Original strand, 1759786 - 1759840
Alignment:
| Q |
331 |
agtcacactattttgttaagggtcttgctaacatgtttgcattggtttcaacaac |
385 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
1759786 |
agtcacactattttgttaagtgtcttgctaacacatttgcattggttttaacaac |
1759840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 606 - 669
Target Start/End: Original strand, 2022788 - 2022851
Alignment:
| Q |
606 |
aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttc |
669 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
2022788 |
aagagaagaattcagattcaaagtctttttcatgttgtttttgcaagagaaaattttctacttc |
2022851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 672
Target Start/End: Complemental strand, 3157034 - 3156968
Alignment:
| Q |
606 |
aagagaaaaatttggattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcaca |
672 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| | ||||| |||||| ||||| |||||||||| |
|
|
| T |
3157034 |
aagagaagaattcggattcaaggtctttttcatgctccttttgtaagagacaattttctacttcaca |
3156968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 620 - 672
Target Start/End: Original strand, 3167250 - 3167302
Alignment:
| Q |
620 |
gattcaaggtctttttcatgtttattttgcaagagaaaatttgctacttcaca |
672 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
3167250 |
gattcaaagtctttttcatgttgtttttgcaagagaaaattttctacatcaca |
3167302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 27469698 - 27469754
Alignment:
| Q |
18 |
cactttagtttcttaccttcaaaagatttttacttttcttgttacttgaatgtaaaa |
74 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| |||| | ||| |||||||| |
|
|
| T |
27469698 |
cactttagtttcataccttcaaaagattttcacttttgttgtaatttggatgtaaaa |
27469754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 27474117 - 27474160
Alignment:
| Q |
18 |
cactttagtttcttaccttcaaaagatttttacttttcttgtta |
61 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| |||||| |
|
|
| T |
27474117 |
cactttagtttctaaccttcaaaagattttcacttttgttgtta |
27474160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University