View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5824_low_41 (Length: 251)

Name: NF5824_low_41
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5824_low_41
NF5824_low_41
[»] chr2 (24 HSPs)
chr2 (10-149)||(1810740-1810879)
chr2 (189-251)||(1810674-1810736)
chr2 (169-247)||(33256754-33256832)
chr2 (169-230)||(787363-787424)
chr2 (168-225)||(1494423-1494480)
chr2 (175-247)||(680517-680589)
chr2 (181-236)||(10563548-10563603)
chr2 (170-223)||(5902528-5902581)
chr2 (175-228)||(9595291-9595344)
chr2 (170-233)||(1647264-1647327)
chr2 (172-251)||(26857091-26857170)
chr2 (172-247)||(33941923-33941998)
chr2 (169-247)||(43570428-43570506)
chr2 (209-247)||(3067397-3067435)
chr2 (169-247)||(35378994-35379072)
chr2 (209-247)||(43985021-43985059)
chr2 (170-228)||(44606089-44606147)
chr2 (168-225)||(4350726-4350783)
chr2 (170-247)||(33192216-33192293)
chr2 (169-246)||(35378510-35378587)
chr2 (169-222)||(43065428-43065481)
chr2 (192-240)||(3235385-3235433)
chr2 (169-228)||(13325603-13325663)
chr2 (169-233)||(43529836-43529900)
[»] chr4 (14 HSPs)
chr4 (168-247)||(2996587-2996666)
chr4 (189-251)||(6978960-6979022)
chr4 (168-240)||(28300276-28300348)
chr4 (169-251)||(21731633-21731716)
chr4 (209-247)||(18011885-18011923)
chr4 (178-240)||(44249306-44249368)
chr4 (209-247)||(47800637-47800675)
chr4 (209-247)||(51630125-51630163)
chr4 (200-240)||(51210463-51210504)
chr4 (170-234)||(679745-679809)
chr4 (200-240)||(1312862-1312902)
chr4 (173-225)||(7205800-7205852)
chr4 (179-247)||(23819103-23819171)
chr4 (189-233)||(29467622-29467666)
[»] chr1 (31 HSPs)
chr1 (168-247)||(37811866-37811945)
chr1 (168-248)||(28689429-28689509)
chr1 (171-247)||(35925704-35925780)
chr1 (174-233)||(11639399-11639458)
chr1 (170-239)||(7575678-7575746)
chr1 (175-248)||(19092368-19092440)
chr1 (169-233)||(10439714-10439778)
chr1 (200-251)||(27820346-27820397)
chr1 (172-247)||(37593665-37593740)
chr1 (170-233)||(43338144-43338207)
chr1 (181-251)||(27140488-27140558)
chr1 (170-228)||(29723522-29723580)
chr1 (169-239)||(31517718-31517788)
chr1 (169-251)||(44422709-44422791)
chr1 (197-247)||(52286692-52286742)
chr1 (180-233)||(4202140-4202193)
chr1 (180-233)||(6292521-6292574)
chr1 (169-246)||(10280664-10280741)
chr1 (170-247)||(37842334-37842411)
chr1 (164-228)||(38503437-38503502)
chr1 (206-251)||(47432105-47432150)
chr1 (170-226)||(1565514-1565570)
chr1 (172-240)||(4768810-4768878)
chr1 (203-247)||(7472325-7472369)
chr1 (169-233)||(10199386-10199450)
chr1 (200-248)||(27820205-27820253)
chr1 (181-237)||(30815643-30815699)
chr1 (197-233)||(33975598-33975634)
chr1 (169-229)||(35669004-35669064)
chr1 (169-237)||(38170668-38170736)
chr1 (209-249)||(51190860-51190900)
[»] chr3 (15 HSPs)
chr3 (166-251)||(39980739-39980825)
chr3 (172-248)||(23808045-23808121)
chr3 (174-221)||(24624250-24624297)
chr3 (166-233)||(53952076-53952143)
chr3 (179-240)||(36139899-36139960)
chr3 (172-228)||(5391912-5391968)
chr3 (168-228)||(47132027-47132087)
chr3 (169-247)||(21367681-21367760)
chr3 (174-233)||(27290884-27290943)
chr3 (169-247)||(27896148-27896226)
chr3 (209-247)||(36887518-36887556)
chr3 (170-228)||(39723219-39723277)
chr3 (170-228)||(45541604-45541662)
chr3 (179-236)||(36101593-36101650)
chr3 (169-222)||(48286788-48286841)
[»] chr8 (12 HSPs)
chr8 (169-233)||(13459673-13459737)
chr8 (175-247)||(42370345-42370417)
chr8 (168-236)||(29168642-29168711)
chr8 (169-233)||(8066748-8066812)
chr8 (197-248)||(39866740-39866791)
chr8 (189-251)||(20672760-20672822)
chr8 (170-251)||(3254235-3254316)
chr8 (210-247)||(11494160-11494197)
chr8 (166-247)||(11569432-11569513)
chr8 (168-236)||(29169075-29169142)
chr8 (200-240)||(31168035-31168075)
chr8 (169-233)||(42215284-42215348)
[»] chr5 (12 HSPs)
chr5 (168-240)||(13604826-13604898)
chr5 (169-236)||(17258861-17258928)
chr5 (209-247)||(10272449-10272487)
chr5 (174-240)||(21768180-21768246)
chr5 (168-233)||(4659210-4659275)
chr5 (189-236)||(5284446-5284493)
chr5 (168-247)||(17368690-17368769)
chr5 (189-251)||(2468441-2468503)
chr5 (175-233)||(11700362-11700420)
chr5 (180-233)||(14331395-14331448)
chr5 (169-233)||(499709-499773)
chr5 (168-240)||(8089957-8090029)
[»] chr6 (12 HSPs)
chr6 (178-236)||(11600861-11600919)
chr6 (170-228)||(31624123-31624181)
chr6 (181-247)||(34939758-34939824)
chr6 (168-228)||(32171360-32171420)
chr6 (171-222)||(283134-283185)
chr6 (197-240)||(27894067-27894110)
chr6 (168-251)||(34538195-34538278)
chr6 (174-233)||(34544127-34544186)
chr6 (170-228)||(696635-696693)
chr6 (168-234)||(725632-725698)
chr6 (168-248)||(32577963-32578043)
chr6 (169-229)||(34404703-34404763)
[»] chr7 (12 HSPs)
chr7 (167-220)||(19719047-19719100)
chr7 (174-246)||(27626106-27626178)
chr7 (204-247)||(12792576-12792619)
chr7 (175-221)||(12834946-12834992)
chr7 (169-231)||(33894657-33894719)
chr7 (170-228)||(43219623-43219681)
chr7 (174-228)||(44808191-44808245)
chr7 (174-247)||(12110374-12110447)
chr7 (168-225)||(13960700-13960757)
chr7 (169-228)||(19302540-19302600)
chr7 (172-240)||(25670567-25670635)
chr7 (169-233)||(46082064-46082128)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 1810879 - 1810740
Alignment:
Q  10 attattcttatcatcagcagccatatctcttaacacaactctctaccaacagccaaaacaaaaatagaagtcaagcttacactctctttttctagttcaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1810879 attattcttatcatcagcagccatatctcttaacacaactctctaccaacagccaaaacaaaaatacaagtcaagcttacactctctttttctagttcaa 1810780  T
Q  110 ctacttatttgtttatgttaaaaattaggatctgtttgga 149  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  1810779 ctacttatttgtttatgttaaaaattaggatctgtatgga 1810740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 1810736 - 1810674
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1810736 tatgacaggtcaataaacttttttcagcttattttcataaactcttcaagatagcttataaaa 1810674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 33256832 - 33256754
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||| |||||||||||||| ||||||| || |||||||| || ||||||||||||||||   |||||| ||||||||||    
T  33256832 gagagcttatgaaaacagcttatgacatgttcataaactgttctcagcttattttcatacggtcttcaggatggcttat 33256754  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 787424 - 787363
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaac 230  Q
    ||||||||||||||||||| ||||||| |||||||| || |||||||||||| | |||||||    
T  787424 gagaacttatgaaaacagcttatgacatgtccataagctgttttcagcttatctccataaac 787363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 1494423 - 1494480
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttca 225  Q
    ||||| |||||||||||||| ||||||| ||||||||||| |||| ||||||||||||    
T  1494423 agagagcttatgaaaacagcttatgacatgtccataaactgtttttagcttattttca 1494480  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 680589 - 680517
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||||||||| ||||||| ||  ||||||| ||||||||||||||||| ||  |||||||||| ||||||    
T  680589 ttatgaaaacagcttatgacatgtttataaactgttttcagcttattttcacaagttcttcaagatagcttat 680517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 10563548 - 10563603
Alignment:
Q  181 aaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttca 236  Q
    ||||||||||||||| |||||||| || |||||||||||||||| ||| |||||||    
T  10563548 aaacagcctatgacatgtccataagctattttcagcttattttcttaagctcttca 10563603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 5902528 - 5902581
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttatttt 223  Q
    |||||||||||||||||| ||||||| || |||||||| |||||||||| ||||    
T  5902528 agaacttatgaaaacagcttatgacatgttcataaactgttttcagcttgtttt 5902581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 228
Target Start/End: Complemental strand, 9595344 - 9595291
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    ||||||||||| | ||||||| |||||| |||| ||||||||||||||||||||    
T  9595344 ttatgaaaacatcttatgacatgtccatgaactattttcagcttattttcataa 9595291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 1647327 - 1647264
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||||||||||||| ||||||| |  ||||| || |||||||||||||| ||||| ||||    
T  1647327 agaacttatgaaaacagcttatgacatgctcataagctgttttcagcttatttccataagctct 1647264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 26857091 - 26857170
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    |||||||||||||| | |||||||||| || |  || |||||||||||||| || ||||||| |||||| ||||| ||||    
T  26857091 aacttatgaaaacaacttatgacaggttcagagtctattttcagcttatttccacaaactctccaagatagcttacaaaa 26857170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 33941998 - 33941923
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||||||||||||| | ||||||| || ||||| ||  ||||| |||||| ||||||||||| |||||| ||||||    
T  33941998 aacttatgaaaacaacttatgacaagttcataagctgctttcaacttattatcataaactctccaagatagcttat 33941923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 43570506 - 43570428
Alignment:
Q  169 gagaacttatgaaaacagcctatgaca-ggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||||||||||||||| |||||||  || ||||| ||||||| ||||||||||||||| || | || ||||||||||    
T  43570506 gagaacttatgaaaacagcttatgacattgttcataagctttttt-agcttattttcataagctttccaggatggcttat 43570428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 3067397 - 3067435
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  3067397 tttttagcttattttcataaactcttcaagatagcttat 3067435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 35378994 - 35379072
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||| ||||||||||||||  |||||  || |||||  | |||||||||||||||||||| |||| |||||| ||||||    
T  35378994 gagagcttatgaaaacagctgatgacttgttcataagttgttttcagcttattttcataagctctccaagatagcttat 35379072  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 43985021 - 43985059
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  43985021 ttttcagcttattttcataagctcttcaagatagcttat 43985059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 44606089 - 44606147
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    |||||||||||||||| | ||||||| ||||||||  | ||||||||| ||||||||||    
T  44606089 agaacttatgaaaacaacttatgacatgtccataagttgttttcagctgattttcataa 44606147  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 4350783 - 4350726
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttca 225  Q
    |||||||||||||||||||| ||||||| || ||||||||  ||| || |||||||||    
T  4350783 agagaacttatgaaaacagcttatgacatgttcataaactgattttaggttattttca 4350726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 247
Target Start/End: Complemental strand, 33192293 - 33192216
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||||||||||||||||  |||||||  ||||||| || |||||||||||| || |||| |||| || ||| ||||||    
T  33192293 agaacttatgaaaacagtttatgacatatccataagctgttttcagcttatatttataagctctccaggatagcttat 33192216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 35378510 - 35378587
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggctta 246  Q
    |||||||||||||||||||  |||||  || |||||  | |||||||||||||||||||| || | |||||| |||||    
T  35378510 gagaacttatgaaaacagctgatgacttgttcataagttattttcagcttattttcataagctatccaagattgctta 35378587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 43065428 - 43065481
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattt 222  Q
    |||| |||||||||||| | ||||||| ||||||||| | ||||||||||||||    
T  43065428 gagagcttatgaaaacaacttatgacatgtccataaattgttttcagcttattt 43065481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 3235385 - 3235433
Alignment:
Q  192 gacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    ||||||| ||||| || |||||||||||||| |||||||| ||||||||    
T  3235385 gacaggttcataagctgttttcagcttatttccataaacttttcaagat 3235433  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 13325663 - 13325603
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataa 228  Q
    |||||||| |||||||||| |||||||  || ||||| |||||||||||| ||||||||||    
T  13325663 gagaacttttgaaaacagcttatgacatttcacataagcttttttcagctcattttcataa 13325603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 43529836 - 43529900
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||| ||||||||||||| |||| || || ||||| || ||||||| |||||||||||| ||||    
T  43529836 gagaatttatgaaaacagcttatgccatgttcataagctattttcagtttattttcataagctct 43529900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 2996666 - 2996587
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||| |||||||||||| | ||||||| |||||||| ||||||||| ||||||||||||  |||| |||||| ||||||    
T  2996666 agagagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttat 2996587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 6978960 - 6979022
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    ||||||| ||| |||| || |||||||||||||||||||||||||| | ||||||||||||||    
T  6978960 tatgacatgtctataagctgttttcagcttattttcataaactctttaggatggcttataaaa 6979022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 28300276 - 28300348
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    |||||| ||||||||||||||||||||| || | |||  | |||||| ||||||||||||| |||||||||||    
T  28300276 agagaatttatgaaaacagcctatgacatgttcttaagttgttttcaacttattttcataagctcttcaagat 28300348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 21731633 - 21731716
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    ||||||||||||||||||| ||| |||  |  ||||||||||||||| |||| ||||||||| ||| ||| || ||||||||||    
T  21731633 gagaacttatgaaaacagcttatcacaattttcataaacttttttcaacttactttcataaattctccaatatagcttataaaa 21731716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 18011923 - 18011885
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  18011923 tttttagcttattttcataaactcttcaagatagcttat 18011885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 44249368 - 44249306
Alignment:
Q  178 tgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    |||||||||| ||||||| ||  ||||  ||| ||||||||||||||||||||||| ||||||    
T  44249368 tgaaaacagcttatgacatgttgataagttttcttcagcttattttcataaactctccaagat 44249306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 47800675 - 47800637
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  47800675 ttttcagcttattttcataagctcttcaagatagcttat 47800637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 51630163 - 51630125
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  51630163 ttttcagcttattttcataaattcttcaagatagcttat 51630125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 51210463 - 51210504
Alignment:
Q  200 cataaact-tttttcagcttattttcataaactcttcaagat 240  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  51210463 cataaactatttttcagcttattttcataaactctccaagat 51210504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 679809 - 679745
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactctt 234  Q
    |||| ||||||||||| | ||||| | || |||||||| |||||||| ||||||||||| |||||    
T  679809 agaagttatgaaaacatcttatgatatgttcataaactgttttcagcatattttcataagctctt 679745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 1312902 - 1312862
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagat 240  Q
    |||||||| |||||||||||||| |||||||||| ||||||    
T  1312902 cataaactgttttcagcttatttccataaactctccaagat 1312862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 225
Target Start/End: Original strand, 7205800 - 7205852
Alignment:
Q  173 acttatgaaaacagcctatgacaggtccataaacttttttcagcttattttca 225  Q
    ||||| || |||||| ||||||| ||||| ||||| |||||||||||||||||    
T  7205800 acttaagataacagcttatgacatgtccacaaactattttcagcttattttca 7205852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 23819171 - 23819103
Alignment:
Q  179 gaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||||| ||||||| ||||||||  | |||||| |||||||  |||| ||||||||||| ||||||    
T  23819171 gaaaacagcttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttat 23819103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 29467622 - 29467666
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||| |||||||| || |||||||||||||| ||||||||||    
T  29467622 tatgacatgtccataagctgttttcagcttatttccataaactct 29467666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 37811945 - 37811866
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||||||||||||||||||| ||||||| || |||||||| |||||| ||||||| ||| | |||| || ||||||||||    
T  37811945 agagaacttatgaaaacagcttatgacatgttcataaactgttttcaacttatttccattagctctccatgatggcttat 37811866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 28689429 - 28689509
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttata 248  Q
    |||||||||| | ||||||| ||||||| ||||||||  | |||||||||||||||||||| || | |||||| |||||||    
T  28689429 agagaacttacggaaacagcttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttata 28689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 35925780 - 35925704
Alignment:
Q  171 gaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||||||||||||| ||||||| || ||||| || |||||| ||||||| |||||||||| || ||| ||||||    
T  35925780 gaacttatgaaaacagcttatgacatgttcataagctgttttcaacttatttccataaactctccatgatagcttat 35925704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 11639399 - 11639458
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||||||||| ||||||| |||||||| || |||| ||||||||||||||| ||||    
T  11639399 cttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctct 11639458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 239
Target Start/End: Original strand, 7575678 - 7575746
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaaga 239  Q
    ||||||||||||||  || |||||||||| ||||| || ||| ||||||||||||||||||||| |||||    
T  7575678 agaacttatgaaaatggcttatgacaggttcataagctgttt-cagcttattttcataaactctccaaga 7575746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 19092368 - 19092440
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttata 248  Q
    ||||||||| || |||||||| ||| ||||||| |||||| ||||||||||||| ||||||| ||| |||||||    
T  19092368 ttatgaaaatagtctatgacatgtc-ataaactgttttcaccttattttcataagctcttcaggatagcttata 19092440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 10439778 - 10439714
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||| ||||||||||||  |||||||| |||||||| ||  ||||||||||||| ||||||||||    
T  10439778 gagagcttatgaaaacaaactatgacatgtccataatctgctttcagcttatttccataaactct 10439714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 27820346 - 27820397
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    ||||| || ||||||||||||||||||||| ||| |||||| ||||||||||    
T  27820346 cataagctattttcagcttattttcataaattctccaagatagcttataaaa 27820397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 37593665 - 37593740
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||| ||||| ||| | ||||||| || ||||| || |||||||||||||||||||| |||||||| || ||||||    
T  37593665 aactaatgaacacaacttatgacatgttcataagctgttttcagcttattttcataagctcttcaaaatagcttat 37593740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 43338207 - 43338144
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||||| ||||||| ||||||| || ||||| || |||||||| ||||||||||| ||||    
T  43338207 agaacttatggaaacagcttatgacatgttcataatctattttcagcctattttcataagctct 43338144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 27140558 - 27140488
Alignment:
Q  181 aaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    ||||||| ||||||| ||||||||  | |||||||||||||| ||||| |||| || ||| ||||||||||    
T  27140558 aaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaa 27140488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 29723580 - 29723522
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    |||||| ||| ||||||| ||||||| ||||||||||| |||||| ||||||| |||||    
T  29723580 agaactaatggaaacagcttatgacatgtccataaactgttttcaacttatttacataa 29723522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 31517718 - 31517788
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaaga 239  Q
    |||||||||| |||||| |  |||||| || ||||| || |||||||||||||||||||| |||| |||||    
T  31517718 gagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataagctctccaaga 31517788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 44422791 - 44422709
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    |||| |||||||||| ||| ||||||| |||||||| ||   | |||||||||||||||| |||| || ||| ||||||||||    
T  44422791 gagagcttatgaaaatagcttatgacatgtccataagctgactacagcttattttcataagctctccaggatagcttataaaa 44422709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 52286742 - 52286692
Alignment:
Q  197 gtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||||||| || |||| ||||||||| |||||||||||||||||| |||||    
T  52286742 gtccataagctatttttagcttatttccataaactcttcaagatgacttat 52286692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 4202140 - 4202193
Alignment:
Q  180 aaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||| ||||||| |||||||| || |||||||||||||||| ||| ||||    
T  4202140 aaaacagcttatgacatgtccataagctattttcagcttattttcgtaagctct 4202193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 6292574 - 6292521
Alignment:
Q  180 aaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||| ||||||| || ||||| || |||||||||||||||||||| ||||    
T  6292574 aaaacagcttatgacatgttcataagctgttttcagcttattttcataagctct 6292521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 10280741 - 10280664
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggctta 246  Q
    ||||||||||||||||| | |||  || || ||||| ||||| |||||||||||||||||  |||| ||||| |||||    
T  10280741 gagaacttatgaaaacaacttatttcatgttcataagcttttgtcagcttattttcataagttcttgaagatagctta 10280664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 37842334 - 37842411
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||||||||||||||| |  |||||| || ||||| |  ||||||||||||||| ||||  |||||||||| ||||||    
T  37842334 agaacttatgaaaacatctaatgacatgttcataagcagttttcagcttatttttataagttcttcaagatagcttat 37842411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 38503437 - 38503502
Alignment:
Q  164 cgtaagagaacttatgaaaacagcctatgaca-ggtccataaacttttttcagcttattttcataa 228  Q
    |||| ||||||||||| |||||||||||||||  || |||||  | ||||||||||||||||||||    
T  38503437 cgtacgagaacttatggaaacagcctatgacattgttcataagttgttttcagcttattttcataa 38503502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 47432150 - 47432105
Alignment:
Q  206 cttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    |||||||||||||||||||||||| ||||||| ||  |||||||||    
T  47432150 cttttttcagcttattttcataaattcttcaatataacttataaaa 47432105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 1565514 - 1565570
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcat 226  Q
    |||||||| ||| ||||| ||||||| || ||||| || ||||||||||||||||||    
T  1565514 agaacttaggaagacagcttatgacatgtgcataagctgttttcagcttattttcat 1565570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 4768810 - 4768878
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    |||||| ||||||||| || |||| ||||||||  | |||||||||||||| |||||| ||| ||||||    
T  4768810 aacttacgaaaacagcttacgacatgtccataacttgttttcagcttatttccataaattctccaagat 4768878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 7472369 - 7472325
Alignment:
Q  203 aaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||| |||||||||||||||||||| |||| |||||| ||||||    
T  7472369 aaactgttttcagcttattttcataagctctccaagatagcttat 7472325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 10199386 - 10199450
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||| ||||||| ||| ||||||| || |||||  | |||||||||||||||||||| ||||    
T  10199386 gagaactcatgaaaatagcttatgacatgttcataagttgttttcagcttattttcataagctct 10199450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 27820205 - 27820253
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagatggcttata 248  Q
    ||||| || ||||||||||||||||||||| |||| ||||| |||||||    
T  27820205 cataagctattttcagcttattttcataaattctttaagatagcttata 27820253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 30815643 - 30815699
Alignment:
Q  181 aaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaa 237  Q
    ||||||| ||||||| || |||||| | ||||||||||||||||||||  |||||||    
T  30815643 aaacagcttatgacatgttcataaaatgttttcagcttattttcataagttcttcaa 30815699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 33975634 - 33975598
Alignment:
Q  197 gtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  33975634 gtccataaactattttcagcttattttcataagctct 33975598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 35669064 - 35669004
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaa 229  Q
    |||||||||||||| |||| ||||| | ||||||||| | |||||| ||||||| ||||||    
T  35669064 gagaacttatgaaagcagcttatgatatgtccataaattgttttcaacttatttccataaa 35669004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 38170668 - 38170736
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaa 237  Q
    |||| |||||||||||||| ||||||| || |||||  | |||||||||| ||||| ||| ||||||||    
T  38170668 gagagcttatgaaaacagcttatgacatgttcataagttgttttcagcttgttttcctaagctcttcaa 38170736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 51190900 - 51190860
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttataa 249  Q
    ||||||||||||||||||||  |||||||||| ||||||||    
T  51190900 ttttcagcttattttcataagttcttcaagatagcttataa 51190860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 39980825 - 39980739
Alignment:
Q  166 taagagaacttatgaaaacagcctatgacagg-tccataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    |||||||||||||||||||||| |||||| || | ||||| ||||||||| |||||||||||||  ||| ||| || ||||||||||    
T  39980825 taagagaacttatgaaaacagcttatgactggtttcataagcttttttcaacttattttcataagttctccaatatagcttataaaa 39980739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 23808045 - 23808121
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttata 248  Q
    ||||||||||| |||| ||||||| || || ||| | |||||| |||||||||||||||||| |||||| |||||||    
T  23808045 aacttatgaaagcagcttatgacatgttcacaaattgttttcatcttattttcataaactctccaagatagcttata 23808121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 221
Target Start/End: Complemental strand, 24624297 - 24624250
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttatt 221  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||||    
T  24624297 cttatgaaaacagcttatgacatgtccataaactgttttcagcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 53952143 - 53952076
Alignment:
Q  166 taagagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||||||||||||||||||  || ||| || ||| | || |||||||||||||||||||||||||    
T  53952143 taagagaacttatgaaaacagctgataacatgttcatgagctgttttcagcttattttcataaactct 53952076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 36139960 - 36139899
Alignment:
Q  179 gaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    ||||||||| ||||||| || || || || |||||||||||||||||||| |||||||||||    
T  36139960 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctcttcaagat 36139899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 5391968 - 5391912
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    |||||||||||||||| ||||||| || ||||| || |||||| |||||||||||||    
T  5391968 aacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataa 5391912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 47132087 - 47132027
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    |||||||||||||||||| | |||| ||  |||||||||| ||||||||||||||| ||||    
T  47132087 agagaacttatgaaaacaacttatgtcatatccataaactgttttcagcttatttttataa 47132027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 21367760 - 21367681
Alignment:
Q  169 gagaacttatgaaaacagcctatgacag-gtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||||||||||||||| |||||||  || || || || ||||||||||||||||||||  ||| |||||| ||||||    
T  21367760 gagaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagcttat 21367681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 27290884 - 27290943
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||||||||| ||||||| | |||||| || |||||||||||||| ||| ||||||    
T  27290884 cttatgaaaacagcttatgacatgcccataagctgttttcagcttatttccatgaactct 27290943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Original strand, 27896148 - 27896226
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||| |||||||||||||  |||||| || |||||| | |  |||||||||||||| ||||||| |||||| ||||||    
T  27896148 gagaatttatgaaaacagctcatgacaagttcataaattgtcgtcagcttattttcaaaaactctccaagatagcttat 27896226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 36887556 - 36887518
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  36887556 ttttcagcttattttcataagttcttcaagatggcttat 36887518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 39723219 - 39723277
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    ||||||||| |||||||| ||||||| || ||||| || ||||||||||||| ||||||    
T  39723219 agaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataa 39723277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 45541662 - 45541604
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    |||||||||||||||||| ||||||| || ||||| || ||||||| ||||| ||||||    
T  45541662 agaacttatgaaaacagcttatgacatgttcataagctgttttcaggttattctcataa 45541604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 36101650 - 36101593
Alignment:
Q  179 gaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttca 236  Q
    ||||||||| ||||||| || || || || |||||||||||||||||||| |||||||    
T  36101650 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataagctcttca 36101593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 48286788 - 48286841
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattt 222  Q
    ||||||||||||||||| |||| |||| ||||||||||  || |||||||||||    
T  48286788 gagaacttatgaaaacaacctacgacatgtccataaaccgttatcagcttattt 48286841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 13459737 - 13459673
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||||||||||||||| |||||||  | |||||||| |||||||| ||||||||||| ||||    
T  13459737 gagaacttatgaaaacagcttatgacattttcataaactgttttcagcctattttcataagctct 13459673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 42370345 - 42370417
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||||| ||| ||||||| ||| | ||||| |||||||||||||| ||||||||||||| ||| ||||||    
T  42370345 ttatgaaaatagcgtatgacatgtctacaaactgttttcagcttatttccataaactcttcatgatagcttat 42370417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 29168642 - 29168711
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaact-tttttcagcttattttcataaactcttca 236  Q
    ||||| |||||||||||||| ||||||| |||||||| || |||| ||||| | ||||||||||||||||    
T  29168642 agagagcttatgaaaacagcttatgacatgtccataagctattttccagctaactttcataaactcttca 29168711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 8066748 - 8066812
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||| ||||||||||  ||  |||||| ||||||||  |||||||||||||||||||||||||||    
T  8066748 gagagcttatgaaaatcgctgatgacatgtccataagtttttttcagcttattttcataaactct 8066812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 39866740 - 39866791
Alignment:
Q  197 gtccataaacttttttcagcttattttcataaactcttcaagatggcttata 248  Q
    |||||||| || ||||||| |||||||||||| ||||||||||| |||||||    
T  39866740 gtccataagctgttttcagtttattttcataagctcttcaagatagcttata 39866791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 20672822 - 20672760
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    ||||||| || ||||| || |||||||||||||||||||| |||| || ||| ||||||||||    
T  20672822 tatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttataaaa 20672760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 3254316 - 3254235
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    |||||||| ||||||||| ||||||| || ||||| || ||||||||||||||  ||| |||||  | ||| ||||||||||    
T  3254316 agaacttaagaaaacagcttatgacatgttcataagctgttttcagcttatttctatacactctataggatagcttataaaa 3254235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 11494197 - 11494160
Alignment:
Q  210 tttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  11494197 tttcagcttattttcataagctcttcaagatagcttat 11494160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 11569432 - 11569513
Alignment:
Q  166 taagagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||| |||||| ||||||| ||||||| || |||||  | ||||||||||||||||| || |||| || ||| ||||||    
T  11569432 taagagagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttat 11569513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 29169075 - 29169142
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttca 236  Q
    ||||||||||| |||||||| ||| |||  ||||||| || ||||| |||||||| |||||||||||||    
T  29169075 agagaacttat-aaaacagcttataacatatccataagctattttcggcttatttccataaactcttca 29169142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 31168075 - 31168035
Alignment:
Q  200 cataaacttttttcagcttattttcataaactcttcaagat 240  Q
    |||||||||||||||||||| |||||||| |||||| ||||    
T  31168075 cataaacttttttcagcttactttcataagctcttctagat 31168035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 42215284 - 42215348
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||| ||||||||||| ||||||  || ||||| || |||||||||||||| ||||| ||||    
T  42215284 gagaactaatgaaaacagcttatgacttgttcataagctgttttcagcttatttacataagctct 42215348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 13604826 - 13604898
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    ||||| |||||||||||||| ||||||| |||||||   | |||||| ||||||||||||| |||||||||||    
T  13604826 agagagcttatgaaaacagcttatgacatgtccatacgttgttttcaacttattttcataagctcttcaagat 13604898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 236
Target Start/End: Original strand, 17258861 - 17258928
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttca 236  Q
    |||||| |||||||| ||| ||||||| || ||||| || |||||||||||||||||||| |||||||    
T  17258861 gagaacctatgaaaatagcttatgacatgttcataagctgttttcagcttattttcataagctcttca 17258928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 209 - 247
Target Start/End: Original strand, 10272449 - 10272487
Alignment:
Q  209 ttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  10272449 ttttcagcttattttcataaactctccaagatggcttat 10272487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 21768180 - 21768246
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    |||||||||||||| ||||||| |||||||  || |||||| ||||||||| ||| |||||||||||    
T  21768180 cttatgaaaacagcttatgacatgtccatacgctgttttcaacttattttcgtaagctcttcaagat 21768246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 4659275 - 4659210
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||| |||||||||||| ||||| |  |||||||||| ||||| |||||||| ||||||||||    
T  4659275 agagaacgtatgaaaacagcttatgaaaattccataaactgttttcggcttatttccataaactct 4659210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 5284446 - 5284493
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttca 236  Q
    ||||||| |||||||| ||||||||||||||||||||| | |||||||    
T  5284446 tatgacatgtccataagcttttttcagcttattttcattagctcttca 5284493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 17368769 - 17368690
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||||||||||||||||| | ||||||| || ||||  |  |||||||||||||| ||||| |||| |||||| ||||||    
T  17368769 agagaacttatgaaaacaacttatgacatgttcatatgcagttttcagcttatttccataacctctccaagatagcttat 17368690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 2468503 - 2468441
Alignment:
Q  189 tatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    ||||||| |||||||| || |||| |||||| || ||||||||||||| ||| ||||||||||    
T  2468503 tatgacatgtccataagctgttttgagcttacttccataaactcttcaggatagcttataaaa 2468441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 233
Target Start/End: Original strand, 11700362 - 11700420
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||| ||||| | ||||||| |||||||| || ||||||| |||||||||||||||||    
T  11700362 ttatggaaacaacttatgacatgtccataagctgttttcagattattttcataaactct 11700420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 14331448 - 14331395
Alignment:
Q  180 aaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||| ||||||| |||||||| ||  ||||||||||||||||||| ||||    
T  14331448 aaaacagcttatgacatgtccataagctgatttcagcttattttcataagctct 14331395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 499709 - 499773
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    ||||||||||||||||||| ||||||| ||  | ||  | |||||||||||||| ||||||||||    
T  499709 gagaacttatgaaaacagcttatgacatgttaacaagttgttttcagcttatttccataaactct 499773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 240
Target Start/End: Complemental strand, 8090029 - 8089957
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    ||||| |||||||||||| | ||||| |  | | ||| || |||||||||||||||||||| |||||||||||    
T  8090029 agagagcttatgaaaacaacttatgatatattcctaagctgttttcagcttattttcataagctcttcaagat 8089957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 11600861 - 11600919
Alignment:
Q  178 tgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttca 236  Q
    |||||||||| ||||||| ||||| ||||| |||||||||||||||||||  |||||||    
T  11600861 tgaaaacagcttatgacatgtccaaaaactattttcagcttattttcataggctcttca 11600919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 31624181 - 31624123
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    |||||||||||||||||| ||||||| || ||||| || |||||| |||||||||||||    
T  31624181 agaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataa 31624123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 34939824 - 34939758
Alignment:
Q  181 aaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    ||||||| ||||||| ||||||||| | |||||||||||||| |||||||||| || ||| ||||||    
T  34939824 aaacagcttatgacatgtccataaattgttttcagcttatttccataaactctccaggatagcttat 34939758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 32171360 - 32171420
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    ||||| |||||||||||||| ||||||| ||||| || || |||||||||||||| |||||    
T  32171360 agagagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataa 32171420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 283185 - 283134
Alignment:
Q  171 gaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattt 222  Q
    |||| ||| |||||||| ||||||| ||||||||||| ||||||||||||||    
T  283185 gaacgtataaaaacagcttatgacatgtccataaactattttcagcttattt 283134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 27894110 - 27894067
Alignment:
Q  197 gtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    ||||||||||| |||||||||||||||||||| || ||||||||    
T  27894110 gtccataaactgttttcagcttattttcataagcttttcaagat 27894067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 34538195 - 34538278
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttataaaa 251  Q
    ||||| ||||| |||||||| || |||| ||||||||||| ||||||||||||||  | |||||||  | ||| ||||||||||    
T  34538195 agagatcttataaaaacagcttacgacatgtccataaactattttcagcttatttatacaaactctctaggatagcttataaaa 34538278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 34544127 - 34544186
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||||||||||||  ||||||| ||||||||||| |||||| |||||||  |||||||||    
T  34544127 cttatgaaaacagtttatgacatgtccataaactattttcatcttatttctataaactct 34544186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 696693 - 696635
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    ||||||||| |||||||| ||||||| || ||||| || ||||||||||||| ||||||    
T  696693 agaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataa 696635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 725632 - 725698
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactctt 234  Q
    ||||| |||||||||||| | ||||||| |||| || ||| |||||||||||||| ||||| |||||    
T  725632 agagagcttatgaaaacaacttatgacatgtccgtagactattttcagcttatttccataagctctt 725698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 248
Target Start/End: Original strand, 32577963 - 32578043
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttata 248  Q
    ||||| |||||||||||| | ||||||| |||| | | || |||||||||||||| ||||  ||||||| ||| |||||||    
T  32577963 agagagcttatgaaaacaacttatgacatgtccttgagctgttttcagcttatttccatatgctcttcaggatagcttata 32578043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 34404703 - 34404763
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaa 229  Q
    ||||||||||||||| | | ||||||| || ||||| || |||||||| ||||||||||||    
T  34404703 gagaacttatgaaaatatcttatgacatgtacataagctgttttcagcatattttcataaa 34404763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 19719100 - 19719047
Alignment:
Q  167 aagagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttat 220  Q
    ||||||||||||||||||| | ||||||| || |||||||| ||||||||||||    
T  19719100 aagagaacttatgaaaacaacttatgacatgttcataaactgttttcagcttat 19719047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 27626106 - 27626178
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggctta 246  Q
    |||||| ||||||| ||||||| ||||||||||| |||| | ||||||| ||||| ||||||| ||| |||||    
T  27626106 cttatggaaacagcttatgacatgtccataaactgttttaaacttatttccataagctcttcatgatagctta 27626178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 12792576 - 12792619
Alignment:
Q  204 aacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||    
T  12792576 aactgttttcagcttattttcataagctcttcaagatagcttat 12792619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 12834946 - 12834992
Alignment:
Q  175 ttatgaaaacagcctatgacaggtccataaacttttttcagcttatt 221  Q
    ||||| ||||||| ||||||| ||||||||||| |||||||||||||    
T  12834946 ttatggaaacagcttatgacatgtccataaactgttttcagcttatt 12834992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 33894719 - 33894657
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaact 231  Q
    |||| |||||||||||||| ||||||| ||||||||  | ||||||||||||||  |||||||    
T  33894719 gagagcttatgaaaacagcatatgacatgtccataagttgttttcagcttatttcaataaact 33894657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 43219623 - 43219681
Alignment:
Q  170 agaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    ||||||||| |||||||| ||||||| || ||||| || ||||||||||||| ||||||    
T  43219623 agaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataa 43219681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 44808245 - 44808191
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataa 228  Q
    |||||||||| | | ||||||| |||||||| || ||||||||||||||||||||    
T  44808245 cttatgaaaataacttatgacatgtccataacctgttttcagcttattttcataa 44808191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 12110447 - 12110374
Alignment:
Q  174 cttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagatggcttat 247  Q
    |||||||||||| | ||||||| || || ||||| |||| || ||||||||||||  |||||||||| ||||||    
T  12110447 cttatgaaaacaacttatgacatgttcacaaactgtttttagattattttcataagttcttcaagatagcttat 12110374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 13960700 - 13960757
Alignment:
Q  168 agagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttca 225  Q
    ||||| |||||||||||||| ||| ||| |||||||| || | |||||||||||||||    
T  13960700 agagagcttatgaaaacagcttataacaagtccataagctatgttcagcttattttca 13960757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 19302540 - 19302600
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtc-cataaacttttttcagcttattttcataa 228  Q
    ||||| ||||||||||||| |||||||  |  ||||||||||||||| |||||||||||||    
T  19302540 gagaatttatgaaaacagcttatgacaattttcataaacttttttcaacttattttcataa 19302600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 25670567 - 25670635
Alignment:
Q  172 aacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactcttcaagat 240  Q
    |||||||||||||| | ||||||| ||  ||||| | ||||||||||||||||| || |||| ||||||    
T  25670567 aacttatgaaaacaacttatgacatgttaataaattgttttcagcttattttcacaagctctccaagat 25670635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 46082128 - 46082064
Alignment:
Q  169 gagaacttatgaaaacagcctatgacaggtccataaacttttttcagcttattttcataaactct 233  Q
    |||| |||||||||||| | ||||||| | ||||||  | |||||||||||||||||||| ||||    
T  46082128 gagagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagctct 46082064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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