View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_42 (Length: 251)
Name: NF5824_low_42
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 51035608 - 51035848
Alignment:
| Q |
1 |
cagcaagatggattatcttagacaagccagattcttgaatagcaacaacctttgacatgtatctaatggtgccactaggaagttcattggcaagggcttc |
100 |
Q |
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| T |
51035608 |
cagcaagatggagtatcttagacaagccagattcttgaatagcaacaacctttgacatgtatctaatggtgccactaggaagttcattggcaagggcttc |
51035707 |
T |
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| Q |
101 |
caacaataatttccttcgaacttcacaggctcctccactgcatggcataaaaacacacatcatagaaagaattagaataatggaattgtaacaatttata |
200 |
Q |
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| T |
51035708 |
caacaataatttccttcgaacttcataggctcctccactgcatggcataaaaacacacatcatagaaagaattagaataatggaattgtaacaatttata |
51035807 |
T |
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| Q |
201 |
agactatataatatgatcagtgcacttactgttttcctttg |
241 |
Q |
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| T |
51035808 |
agactatataatatgatcagtgcacttactgttttcctttg |
51035848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 51031443 - 51031532
Alignment:
| Q |
27 |
ccagattcttgaatagcaacaacctttgacatgtatctaatggtgccactaggaagttcattggcaagggcttccaacaataatttcctt |
116 |
Q |
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| T |
51031443 |
ccagattcctcaatagcaacaacctttgacatgtacctaatggtgccattgggaagttcattggcaagggcttccaacaataatttcctt |
51031532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 109
Target Start/End: Complemental strand, 40616621 - 40616515
Alignment:
| Q |
3 |
gcaagatggattatcttagacaagccagattcttgaatagcaacaacctttgacatgtatctaatggtgccactaggaagttcattggcaagggcttcca |
102 |
Q |
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| T |
40616621 |
gcaagatggagtatcttaaagaaaccagattcctgaatagcaacaacctttgacaagtacctaatagtgccacttggaagctcactagcaagggcttcca |
40616522 |
T |
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| Q |
103 |
acaataa |
109 |
Q |
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| T |
40616521 |
acaataa |
40616515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 51064191 - 51064273
Alignment:
| Q |
27 |
ccagattcttgaatagcaacaacctttgacatgtatctaatggtgccactaggaagttcattggcaagggcttccaacaataa |
109 |
Q |
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| T |
51064191 |
ccagattcctcaatagcaacaacctttgacatgtacctaatggtgccattgggaagttcatttgcaagggcttccaacaataa |
51064273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 51069606 - 51069676
Alignment:
| Q |
39 |
atagcaacaacctttgacatgtatctaatggtgccactaggaagttcattggcaagggcttccaacaataa |
109 |
Q |
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| T |
51069606 |
atagcaacgacttttgacatgtacctaatggtgctatttggaagttcattgccaagggcttccaacaataa |
51069676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 51064477 - 51064518
Alignment:
| Q |
200 |
aagactatataatatgatcagtgcacttactgttttcctttg |
241 |
Q |
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| T |
51064477 |
aagactatataatatgttcagtgcacttactactttcctttg |
51064518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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