View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_49 (Length: 238)
Name: NF5824_low_49
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 37232637 - 37232414
Alignment:
| Q |
1 |
ttatttaataaaatattatctgattttatgtcacgatggatatatacaggcaccgaatgatcatgaatatactcaaggcctcttgctacatccagagcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37232637 |
ttatttaataaaatattatctgattttatgtcacgatggatatatacaggcaccgaatgatcatgaatatactcaaggcctcttgctacatccagagcaa |
37232538 |
T |
|
| Q |
101 |
ttttcatccttctagacaaggtcatcagttctttctctgcaaacagtactcaaattaatgaaacatcattgaaaattgatgcttttaatgtgttaataat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37232537 |
ttttcatccttctagacaaggtcatcagttctttctctgcaaaaagtactcaaattaatgaaacatcattgaaaattgatacttttaatgtgttaataat |
37232438 |
T |
|
| Q |
201 |
atcacctgaattatgtagatgttg |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
37232437 |
atcacctgaattatgtagatgttg |
37232414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 169
Target Start/End: Complemental strand, 37223694 - 37223528
Alignment:
| Q |
3 |
atttaataaaatattatctgattttatgtcacgatggatatatacaggcaccgaatgatcatgaatatactcaaggcctcttgctacatccagagcaatt |
102 |
Q |
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|||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| || |||||||| |||||| |
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| T |
37223694 |
atttaacagaatattatctgattttatgtcacgatggatatatacaggaatggaatgatcatgaatatactcaaggcctctcgcaacatccagggcaatt |
37223595 |
T |
|
| Q |
103 |
ttcatccttctagacaaggtcatcagttctttctctgcaaacagtactcaaattaatgaaacatcat |
169 |
Q |
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| T |
37223594 |
ttcatccttgtagacaacgttatcggttctttctctgcaaatggtattcaaatcaatgaaacatcat |
37223528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 169
Target Start/End: Complemental strand, 37217994 - 37217828
Alignment:
| Q |
3 |
atttaataaaatattatctgattttatgtcacgatggatatatacaggcaccgaatgatcatgaatatactcaaggcctcttgctacatccagagcaatt |
102 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||| || || || || |||||||| |||||| |
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| T |
37217994 |
atttaacaaaatattatctgattttatgtcgcgatggatatatacgggaacggaatgatcatgaatatactctagacccctcgcaacatccagggcaatt |
37217895 |
T |
|
| Q |
103 |
ttcatccttctagacaaggtcatcagttctttctctgcaaacagtactcaaattaatgaaacatcat |
169 |
Q |
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||||||||| ||||||| |||||| ||||||||||||||||||||| |||||| ||| ||||||||| |
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| T |
37217894 |
ttcatccttgtagacaacgtcatcggttctttctctgcaaacagtattcaaatcaattaaacatcat |
37217828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 37385292 - 37385428
Alignment:
| Q |
3 |
atttaataaaatattatctgattttatgtcacgatggatatatacaggcaccgaatgatcatgaatatactcaaggcctcttgctacatccagagcaatt |
102 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||| |
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| T |
37385292 |
atttaataaaatattatctgatttgatgtcgcgatggatgtatacaggcactgaatgctcatgaatgtattcaaggcctcttgctacatccagagcaatt |
37385391 |
T |
|
| Q |
103 |
ttcatccttctagacaaggtcatcagttctttctctg |
139 |
Q |
| |
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| |||||| ||||| | |||||| || || |||||| |
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| T |
37385392 |
tgcatcctggtagaccacgtcatcggtcctctctctg |
37385428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 37203562 - 37203451
Alignment:
| Q |
6 |
taataaaatattatctgattttatgtcacgatggatatatacaggcaccgaatgatcatgaatatactcaaggcctcttgctacatccagagcaattttc |
105 |
Q |
| |
|
||||||||| || || || ||||| || ||||||||||||||||| || | ||| ||||||||||| ||||| ||||| ||| |||||| ||||||| | |
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| T |
37203562 |
taataaaatgttctccgactttatatcgcgatggatatatacaggtactgtatgttcatgaatatattcaagacctctggctgaatccagcgcaatttgc |
37203463 |
T |
|
| Q |
106 |
atccttctagac |
117 |
Q |
| |
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|||||| ||||| |
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| T |
37203462 |
atccttgtagac |
37203451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 37315766 - 37315683
Alignment:
| Q |
20 |
ctgattttatgtcacgatggatatatacaggcaccgaatgatcatgaatatactcaaggcctcttgctacatccagagcaattt |
103 |
Q |
| |
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||||||||| |||||||||||||| | |||||| | ||| |||||||| || ||||||||||||||| ||| |||||||||| |
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| T |
37315766 |
ctgattttacatcacgatggatatacataggcacagtatgttcatgaatgtattcaaggcctcttgctgaatctagagcaattt |
37315683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 224
Target Start/End: Complemental strand, 37217801 - 37217771
Alignment:
| Q |
194 |
taataatatcacctgaattatgtagatgttg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
37217801 |
taataatatcacctgaattatgtagatgttg |
37217771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 224
Target Start/End: Complemental strand, 37223500 - 37223470
Alignment:
| Q |
194 |
taataatatcacctgaattatgtagatgttg |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
37223500 |
taataatatcacctgaattatgtagatgttg |
37223470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 36199620 - 36199562
Alignment:
| Q |
25 |
tttatgtcacgatggatatatacaggcaccgaatgatcatgaatatactcaaggcctct |
83 |
Q |
| |
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|||||||||||||| |||||||||||||| | ||| ||||| ||||| ||||| ||||| |
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| T |
36199620 |
tttatgtcacgatgaatatatacaggcactgtatgctcatggatatattcaagacctct |
36199562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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