View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5824_low_5 (Length: 702)
Name: NF5824_low_5
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Complemental strand, 36458609 - 36458064
Alignment:
| Q |
1 |
tacatttcacagctcatatgattttgggtatctagttaagattttgactcagaattacttaccgtctcgattggaggaattcttaagcatcttaacg-aa |
99 |
Q |
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| T |
36458609 |
tacatttcacagctcatatgattttgggtatctagttaagattttgactcagaattacttaccgtctcgattggaggaattcttaagcatcttaacacaa |
36458510 |
T |
|
| Q |
100 |
atattttggacggaatgtctatgatatgaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgg |
199 |
Q |
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| T |
36458509 |
atattt-ggacagaatgtctatgatatgaagtatatgatcaaattctgcaacttatatggtggtctggaacgtgttgccactaaactcaaggtcagccgg |
36458411 |
T |
|
| Q |
200 |
gcggtcggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcacta |
299 |
Q |
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| T |
36458410 |
gcggtcggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttattttgtcaacaatggaatcacta |
36458311 |
T |
|
| Q |
300 |
tgcacgcaggggtgttatttggtttagaagtgacagtttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgtta |
399 |
Q |
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| T |
36458310 |
tgcacgcaggggtgttatttgggttagaagtgacagtttaggattagaaaaagaaaattgtaaaaatatattggtattctttgttttggaatcaacgtta |
36458211 |
T |
|
| Q |
400 |
ttactttaatgtctatattactactttagtttctctaaagcttatcatgaattagaaacttgaatgaaatagagagccacataaagtgaaagcctattat |
499 |
Q |
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| T |
36458210 |
ttactttaatgtctatattactactttagtttctctaaagcttatca-----------------tgaaatagagagccacataaagtgaaagcctattat |
36458128 |
T |
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| Q |
500 |
ccaaccaatggcatactcctcctaggtgatagaaataatttatagcaagctctaattcaaaataa |
564 |
Q |
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| T |
36458127 |
ccaaccaatggcatgctcctcctaggtgatacaagtaatttgtag-aagctctaagtcgaaataa |
36458064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 565 - 686
Target Start/End: Complemental strand, 36457924 - 36457803
Alignment:
| Q |
565 |
aaataagatgcaaatgagtacatgaggtactcaaccccaatacacaatgttcaacttctataacattctaaatagcataaactccagccgcagaatgtca |
664 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36457924 |
aaataagatgcatatgagtacataaggtactcaaccccaatacacaatgttcaacttttataacattctaaatagcataaactccagccagagaatgtca |
36457825 |
T |
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| Q |
665 |
ttttcggtctgctacctatttt |
686 |
Q |
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| T |
36457824 |
ttttcggtctgctacctatttt |
36457803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 40874816 - 40874742
Alignment:
| Q |
206 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatgaaggacatttatttt |
280 |
Q |
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||||| ||||||||||| | ||||||||||||||||| ||||| || |||||||| |||| ||| | ||||||| |
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| T |
40874816 |
ggaaagtctcatcaagctggatcagatagtttgttgacgtggcatgcatttaagaaaatgatggatacttatttt |
40874742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 40871718 - 40871658
Alignment:
| Q |
206 |
ggaaactctcatcaagccgcgtcagatagtttgttgacatggcaagcttttaagaagatga |
266 |
Q |
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||||| || |||||||| | ||||||||||||||||||||||| || |||||||| |||| |
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| T |
40871718 |
ggaaagtcgcatcaagctggatcagatagtttgttgacatggcatgcatttaagaaaatga |
40871658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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