View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5824_low_7 (Length: 580)
Name: NF5824_low_7
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5824_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 21)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 13 - 563
Target Start/End: Complemental strand, 36221610 - 36221056
Alignment:
| Q |
13 |
gaagcaaaggctgagttgataattttgataataatgcgcctaatatcaaaatcattggagacacat--ccaaatcttcaattggaaaatatcatctatcc |
110 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
36221610 |
gaagcaaaagcagagttgataattttgataataatgcgcctaatatcaaaatcattggagacacacacccaaatcttcaattggaaaatatcatctatcc |
36221511 |
T |
|
| Q |
111 |
tcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacaca--aatttttgtcaccatctccatctcc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36221510 |
tcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacacacaaatttttgtcaccatctccatctcc |
36221411 |
T |
|
| Q |
209 |
atgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattctctc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36221410 |
atgaggatgcggttgcatcaaaagtttgataatttcttccctgtcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattctctc |
36221311 |
T |
|
| Q |
309 |
ctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36221310 |
ctctgcacaacaggatcaggtgcaacatcgattctcacaagtccaaaccttgtcccgtcagctgccaccttattcaatctatctctaatctctttgattt |
36221211 |
T |
|
| Q |
409 |
tatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaaattgnnnnnn |
508 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36221210 |
tatgtgacatcctaaaacggaaagctagtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaattttattttt |
36221111 |
T |
|
| Q |
509 |
ncttgtcttgcaactcaaatccatcttcagcatcatagcagatgttttgtacctg |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36221110 |
tcttgtcttgcaactcaaatccatcttcagcatcatagcagatgttttgtacctg |
36221056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 50 - 498
Target Start/End: Original strand, 36225994 - 36226446
Alignment:
| Q |
50 |
gcctaatatcaaaatcattggaga--cacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtctt |
147 |
Q |
| |
|
|||||||||||||||||| |||| |||| ||| |||||||||||||||| |||||| | ||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
36225994 |
gcctaatatcaaaatcatcagagatacacacccacatcttcaattggaaaagatcatcaaccctcttatcgttgaacaccaattttgcaagtgtggtctt |
36226093 |
T |
|
| Q |
148 |
ccccaagccaccaattccaactatgggaata--acacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttct |
245 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||| |||| |||||||| |||| || |||||||| || ||||||||||| |||||||| || |
|
|
| T |
36226094 |
ccccaagccaccaattcccactatgggaataacacacaaacttttatcaccatcagcatcaccttgaggatgtggctgcatcaaaagcttgataatatca |
36226193 |
T |
|
| Q |
246 |
tccctatcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcg |
345 |
Q |
| |
|
| ||| ||||||||||| || || ||| |||||||||||||| |||||||| | ||||||| |||||||| || | | ||||| ||| | |
|
|
| T |
36226194 |
ttcctctcattctcccttcctatcacatctgaagcatcaacgtgggaatgagtcatttctctcttctgcacagcaagtcctaaatcaacactaattgctg |
36226293 |
T |
|
| Q |
346 |
caagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttga |
445 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| | || |||| ||||||||||||| ||||| | || |
|
|
| T |
36226294 |
caagtccaaacctagtcccatcagctgccaccttattcaatctatccctaatctctttgattcgacatgccatcttaaaacggaaagcaagtggactaga |
36226393 |
T |
|
| Q |
446 |
ggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaa |
498 |
Q |
| |
|
||||||||| || |||| ||||||||| | |||||||| ||||||| ||||| |
|
|
| T |
36226394 |
ggaagaaaaaaattggcgtaccttcatcctagtgctgcatgaagcttccacaa |
36226446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 25 - 557
Target Start/End: Complemental strand, 36217613 - 36217069
Alignment:
| Q |
25 |
gagttgataattttgataataatgcgcctaatatcaaaatcattggagacacat--ccaaatcttcaattggaaaatatcatctatcctcttatcattga |
122 |
Q |
| |
|
||||||||||||||||||| || | || |||||||||||| ||||||||| ||| ||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
36217613 |
gagttgataattttgataacgatctgtcttatatcaaaatcaacagagacacatgcccacatcttcaattgaaaaacttcatctatcctcttatcattgt |
36217514 |
T |
|
| Q |
123 |
acaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacaca--aatttttgtcaccatctccatctccatgaggatgcgg |
220 |
Q |
| |
|
||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||||| || || | | ||||| ||||| || ||||||| | |
|
|
| T |
36217513 |
acaccaattttgcaagtgtggtcttccccaatcctccaattcccactatgggaataacacataaacttctatgaccatttccataaccttgaggatcgga |
36217414 |
T |
|
| Q |
221 |
ttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattctctcctctgcacaaca |
320 |
Q |
| |
|
| ||||||||| | ||||||| ||||| | ||||||||||| || |||||||||||| |||||| | |||| |||| |||||| | |||||| | |
|
|
| T |
36217413 |
atccatcaaaagctcgataattgcttccttgtcattctcccttcctataacacttgaaacatcaatatgggaataggtgatttctctattgtgcacagaa |
36217314 |
T |
|
| Q |
321 |
ggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcc |
420 |
Q |
| |
|
| | || |||||| |||||| ||||||||||| | ||||| ||||||||||| |||| |||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
36217313 |
agtccgggctcaacatgaattctcacaagtccaaacttggtcccatcagctgccactttatccaatctatctctaatctctttgatttgacgtgacatcc |
36217214 |
T |
|
| Q |
421 |
taaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgca |
520 |
Q |
| |
|
||||||||||||| | ||||| ||||||||||| |||||||||||||||| || ||||| |||||||||| |||||||| | ||||||||| |
|
|
| T |
36217213 |
taaaacggaaagcaagcggattagaggaagaaaagaagtggcataccttcaaccgtgtgcttccagaagcttcaacaaattgctttctcc-tgtcttgca |
36217115 |
T |
|
| Q |
521 |
actcaaatc---------catcttcagcatcatagcagatgttttg |
557 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36217114 |
actcaaatccatccaatacatcttcagcatcatagcagatgttttg |
36217069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 107 - 492
Target Start/End: Original strand, 35982180 - 35982561
Alignment:
| Q |
107 |
atcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacacaaatttttgtcaccatctccatct |
206 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||||| ||||| ||||| || |||||||| || |||||||||||||| | || | ||| ||||| |
|
|
| T |
35982180 |
atcctctcatcattgaaaaccaattttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataacacataagctttt----atcaccatca |
35982275 |
T |
|
| Q |
207 |
ccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattctc |
306 |
Q |
| |
|
|| |||||||| ||| |||||||||| ||||||||||| |||||||| ||||| || || || ||| |||||||||| | |||||||| ||||||| |
|
|
| T |
35982276 |
ccttgaggatgtggtagcatcaaaagcttgataatttcatccctatccttctctcttcctatcacatccaaagcatcaacatgggaatgagtcaattctc |
35982375 |
T |
|
| Q |
307 |
tcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgat |
406 |
Q |
| |
|
| | ||||||| | | |||| ||||||| |||||| |||||||||| | ||||| |||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
35982376 |
ttttttgcacaatatgtccaggatcaacatcaattctcataagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgat |
35982475 |
T |
|
| Q |
407 |
tttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctt |
492 |
Q |
| |
|
| ||||| |||||||| ||| ||||| ||||||| ||||||||||| ||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
35982476 |
tcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagctt |
35982561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 107 - 492
Target Start/End: Original strand, 36003592 - 36003973
Alignment:
| Q |
107 |
atcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacacaaatttttgtcaccatctccatct |
206 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||||| ||||| ||||| || |||||||| || |||||||||||||| | || | ||| ||||| |
|
|
| T |
36003592 |
atcctctcatcattgaaaaccaattttgcaagtgtagtctttcccaaacctccaattcccacaatgggaataacacataagctttt----atcaccatca |
36003687 |
T |
|
| Q |
207 |
ccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaagcatcaacgtatgaatgagtgaattctc |
306 |
Q |
| |
|
|| |||||||| ||| |||||||||| ||||||||||| |||||||| ||||| || || || ||| |||||||||| | |||||||| ||||||| |
|
|
| T |
36003688 |
ccttgaggatgtggtagcatcaaaagcttgataatttcatccctatccttctctcttcctatcacatccaaagcatcaacatgggaatgagtcaattctc |
36003787 |
T |
|
| Q |
307 |
tcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgat |
406 |
Q |
| |
|
| | ||||||| | | |||| ||||||| |||||| |||||||||| | ||||| |||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
36003788 |
ttttttgcacaatatgtccaggatcaacatcaattctcataagtccaaacttagtcccatcagctgccaccttatctaatctattcctaatttctttgat |
36003887 |
T |
|
| Q |
407 |
tttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagtgctgccagaagctt |
492 |
Q |
| |
|
| ||||| |||||||| ||| ||||| ||||||| ||||||||||| ||||||| ||||||| | ||||||||||||||||||| |
|
|
| T |
36003888 |
tcgatgtgccatcctaagacgaaaagcaagtggattagaggaagaaaagaagtggcgtaccttcgtccgagtgctgccagaagctt |
36003973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 179 - 501
Target Start/End: Original strand, 35973546 - 35973868
Alignment:
| Q |
179 |
acacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaa |
278 |
Q |
| |
|
||||||| |||| ||||| |||||||| || |||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35973546 |
acacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataacacttgaa |
35973645 |
T |
|
| Q |
279 |
gcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccacct |
378 |
Q |
| |
|
||||| || | |||| ||| ||||||||||| |||| |||| | ||||| || |||||| ||||||| |||||| | |||| || ||||| |||| |
|
|
| T |
35973646 |
gcatcgacatgggaattagtcaattctctcctatgcaaaacaagttcaggaccattgtcgattttcgcaagaccaaacttgttcccatcggctgctacct |
35973745 |
T |
|
| Q |
379 |
tattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagt |
478 |
Q |
| |
|
||| ||| |||| | ||| ||||||| | ||| ||| ||| |||||||| | ||||||| ||||| ||||| |||| || ||||||||| | || |
|
|
| T |
35973746 |
tatccaacctatcccgaatgcctttgatctgatggtccattctagaacggaaaacaagtggattggaggaggaaaagaagtagcttaccttcatgctcgt |
35973845 |
T |
|
| Q |
479 |
gctgccagaagctttcacaaatt |
501 |
Q |
| |
|
|||||||||||| | |||||||| |
|
|
| T |
35973846 |
gctgccagaagcatccacaaatt |
35973868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 179 - 501
Target Start/End: Original strand, 35994958 - 35995280
Alignment:
| Q |
179 |
acacaaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataacacttgaa |
278 |
Q |
| |
|
||||||| |||| ||||| |||||||| || |||||| | |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35994958 |
acacaaacttttatcaccgtctccatcaccttgaggacgtggttgcatcagaagcttgataatttcttccctatcattctccctcccaataacacttgaa |
35995057 |
T |
|
| Q |
279 |
gcatcaacgtatgaatgagtgaattctctcctctgcacaacaggatcaggtgcaacatcgattctcgcaagtccaaaccttgtcccgtcagctgccacct |
378 |
Q |
| |
|
||||| || | |||| ||| ||||||||||| |||| |||| | ||||| || |||||| ||||||| |||||| | |||| || ||||| |||| |
|
|
| T |
35995058 |
gcatcgacatgggaattagtcaattctctcctatgcaaaacaagttcaggaccattgtcgattttcgcaagaccaaacttgttcccatcggctgctacct |
35995157 |
T |
|
| Q |
379 |
tattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcataccttcattcgagt |
478 |
Q |
| |
|
||| ||| |||| | ||| ||||||| | ||| ||| ||| |||||||| | ||||||| ||||| ||||| |||| || ||||||||| | || |
|
|
| T |
35995158 |
tatccaacctatcccgaatgcctttgatctgatggtccattctagaacggaaaacaagtggattggaggaggaaaagaagtagcttaccttcatgctcgt |
35995257 |
T |
|
| Q |
479 |
gctgccagaagctttcacaaatt |
501 |
Q |
| |
|
|||||||||||| | |||||||| |
|
|
| T |
35995258 |
gctgccagaagcatccacaaatt |
35995280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 35939415 - 35939622
Alignment:
| Q |
25 |
gagttgataattttgataataatgcgcctaatatcaaaatcattggagacacat--ccaaatcttcaattggaaaatatcatctatcctcttatcattga |
122 |
Q |
| |
|
|||||||| ||||| ||||| || |||| |||||||| |||||||||||||| ||| |||||||||||||||| | || | |||||||||||||| |
|
|
| T |
35939415 |
gagttgattattttaataattatctgcctgatatcaaactcattggagacacacaaccacatcttcaattggaaaagttgattcaccctcttatcattga |
35939514 |
T |
|
| Q |
123 |
acaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacac--aaatttttgtcaccatctccatctccatgaggatgcgg |
220 |
Q |
| |
|
|||||||| ||||||||||||||||||| || || |||||||| || ||||||||||||| ||| |||| |||||||| ||||| || |||||||| || |
|
|
| T |
35939515 |
acaccaactttgcaagtgtggtcttccctaatcctccaattcccacaatgggaataacacataaacttttatcaccatcaccatcaccgtgaggatgtgg |
35939614 |
T |
|
| Q |
221 |
ttgcatca |
228 |
Q |
| |
|
|||||||| |
|
|
| T |
35939615 |
ttgcatca |
35939622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 73 - 243
Target Start/End: Original strand, 35958123 - 35958295
Alignment:
| Q |
73 |
acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg |
172 |
Q |
| |
|
||||| ||| |||||||| ||||||| | ||| ||||||||||||||||||||| || |||||||||| ||||| ||||| || |||||||| ||||| |
|
|
| T |
35958123 |
acacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaagtgttgtctttcccaaacctccaattcccactatt |
35958222 |
T |
|
| Q |
173 |
ggaataacac--aaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataattt |
243 |
Q |
| |
|
||||| |||| | | | || |||||||| |||||||| ||||||| || ||||||||||| |||||||||| |
|
|
| T |
35958223 |
ggaatgacacagagactattatcaccatcaccatctccgcgaggatgtggctgcatcaaaagattgataattt |
35958295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 366 - 498
Target Start/End: Original strand, 35977867 - 35977999
Alignment:
| Q |
366 |
tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata |
465 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||| | ||| |||||||||||||||| | ||||||| ||||||||||| ||||||| || |
|
|
| T |
35977867 |
tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta |
35977966 |
T |
|
| Q |
466 |
ccttcattcgagtgctgccagaagctttcacaa |
498 |
Q |
| |
|
|||||| || |||| | |||||||||||||| |
|
|
| T |
35977967 |
ccttcacccgtctgcttcgagaagctttcacaa |
35977999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 366 - 498
Target Start/End: Original strand, 35999279 - 35999411
Alignment:
| Q |
366 |
tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata |
465 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||| | ||| |||||||||||||||| | ||||||| ||||||||||| ||||||| || |
|
|
| T |
35999279 |
tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacggaaaacaagtggattagaggaagaaaagaagtggcgta |
35999378 |
T |
|
| Q |
466 |
ccttcattcgagtgctgccagaagctttcacaa |
498 |
Q |
| |
|
|||||| || |||| | |||||||||||||| |
|
|
| T |
35999379 |
ccttcacccgtctgcttcgagaagctttcacaa |
35999411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 369 - 533
Target Start/End: Original strand, 35958415 - 35958578
Alignment:
| Q |
369 |
gctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcatacct |
468 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| || | ||| ||||||||||||| ||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
35958415 |
gctgccaccttatccaatctatccctaatctctttgatttggtgcgccattttaaaacggaaagcaagtgaattagaggaagaaaacaagtggcgtacct |
35958514 |
T |
|
| Q |
469 |
tcattcgagtgctgccagaagctttcacaaattgnnnnnnncttgtcttgcaactcaaatccatc |
533 |
Q |
| |
|
||| || ||||| |||||||||| ||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
35958515 |
tcacccgtgtgcttccagaagcttccacaacttg-ttttcgcttgtcttgcaagtcaaatccatc |
35958578 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 35965669 - 35965738
Alignment:
| Q |
111 |
tcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataac |
180 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
35965669 |
tcttatcattgaacaccaagtttgcaagtgtggtcttccccaagccaccaattcctagtatgggaataac |
35965738 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 73 - 237
Target Start/End: Original strand, 35946918 - 35947084
Alignment:
| Q |
73 |
acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg |
172 |
Q |
| |
|
||||| ||| |||||||| ||||||| | || |||||||||||||||||||||| || | |||||||||||||||| ||| || |||||||| ||||| |
|
|
| T |
35946918 |
acacacccacatcttcaactggaaaagttgatgtatcctcttatcattgaacaccgacttcgcaagtgtggtcttccacaaacctccaattcccactatt |
35947017 |
T |
|
| Q |
173 |
ggaataacac--aaatttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttga |
237 |
Q |
| |
|
||||| |||| | | | || |||||||| ||||| || |||||||| || ||||||||||| |||| |
|
|
| T |
35947018 |
ggaatgacacagagactattatcaccatcaccatcgccgtgaggatgtggctgcatcaaaagattga |
35947084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 366 - 498
Target Start/End: Original strand, 35947207 - 35947339
Alignment:
| Q |
366 |
tcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttgaggaagaaaacaagtggcata |
465 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||||||||| | ||| |||||||||||| ||| | ||||||| ||||||||||| |||||| || |
|
|
| T |
35947207 |
tcagctgccaccttatccattctatccctaatctctttgatttgacgtgccatcctaaaacgaaaaacaagtggattagaggaagaaaagaagtggacta |
35947306 |
T |
|
| Q |
466 |
ccttcattcgagtgctgccagaagctttcacaa |
498 |
Q |
| |
|
||||| || ||||| | |||||||||||||| |
|
|
| T |
35947307 |
acttcacccgtgtgcttcgagaagctttcacaa |
35947339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 35977578 - 35977690
Alignment:
| Q |
73 |
acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg |
172 |
Q |
| |
|
||||| ||| |||||||| ||||||| | ||| ||||||||||||||||||||| || |||||| |||||||||||||| || |||||||| ||||| |
|
|
| T |
35977578 |
acacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacctccaattcccactatt |
35977677 |
T |
|
| Q |
173 |
ggaataacacaaa |
185 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
35977678 |
ggaatgacacaaa |
35977690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 35998990 - 35999102
Alignment:
| Q |
73 |
acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg |
172 |
Q |
| |
|
||||| ||| |||||||| ||||||| | ||| ||||||||||||||||||||| || |||||| |||||||||||||| || |||||||| ||||| |
|
|
| T |
35998990 |
acacacccacatcttcaactggaaaagttgatccatcctcttatcattgaacaccgactttgcaatggtggtcttccccaaacctccaattcccactatt |
35999089 |
T |
|
| Q |
173 |
ggaataacacaaa |
185 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
35999090 |
ggaatgacacaaa |
35999102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 58 - 181
Target Start/End: Original strand, 29602862 - 29602987
Alignment:
| Q |
58 |
tcaaaatcattggagacacat--ccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagc |
155 |
Q |
| |
|
|||||||||| ||||||||| ||| ||||| ||| ||||| | || |||| |||||||||||||||||| | |||||||||| ||||| ||||||| |
|
|
| T |
29602862 |
tcaaaatcatcggagacacacacccacatctttaatgggaaagtctcgtctaaactcttatcattgaacaccgtctttgcaagtgtagtctttcccaagc |
29602961 |
T |
|
| Q |
156 |
caccaattccaactatgggaataaca |
181 |
Q |
| |
|
| ||||||||||| || ||||||||| |
|
|
| T |
29602962 |
ctccaattccaacaataggaataaca |
29602987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 83 - 183
Target Start/End: Original strand, 35955182 - 35955282
Alignment:
| Q |
83 |
atcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataacac |
182 |
Q |
| |
|
|||||||||| |||||| | ||| | ||| | |||||||||||| ||| |||||||||||||||| ||||| || ||||| || | |||||||||||||| |
|
|
| T |
35955182 |
atcttcaatttgaaaatttgatccaccctttcatcattgaacactaactttgcaagtgtggtctttcccaatcctccaatacctattatgggaataacac |
35955281 |
T |
|
| Q |
183 |
a |
183 |
Q |
| |
|
| |
|
|
| T |
35955282 |
a |
35955282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 29750378 - 29750307
Alignment:
| Q |
110 |
ctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataaca |
181 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||| |||||||| ||||||||||| || ||||||||| |
|
|
| T |
29750378 |
ctcttatcattgaacaccgtctttgcaagtgtagtctttcccaagcctccaattccaacaataggaataaca |
29750307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 29743341 - 29743270
Alignment:
| Q |
110 |
ctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatgggaataaca |
181 |
Q |
| |
|
||||||||||||||||| | ||||||| || ||||| |||||||| ||||||||||| || ||||||||| |
|
|
| T |
29743341 |
ctcttatcattgaacactgtctttgcaagcgtagtctttcccaagcctccaattccaacaataggaataaca |
29743270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 73 - 286
Target Start/End: Original strand, 18125831 - 18126046
Alignment:
| Q |
73 |
acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg |
172 |
Q |
| |
|
||||| ||| ||||||||||| || | |||||||| |||||||||||||| || | | |||| | ||||||||||||||||||||||||||| || ||| |
|
|
| T |
18125831 |
acacacccacatcttcaattgaaagagttcatctattctcttatcattgaaaacaagctttgccaatgtggtcttccccaagccaccaattcccaccatg |
18125930 |
T |
|
| Q |
173 |
ggaataacacaaat--ttttgtcaccatctccatctccatgaggatgcggttgcatcaaaagtttgataatttcttccctatcattctccctcccaataa |
270 |
Q |
| |
|
||||||||| | | |||| |||||||| ||||| ||||||||||| | |||||||||||| |||||||| |||||||||||| |||| || || || | |
|
|
| T |
18125931 |
ggaataacagatagacttttatcaccatcaccatcaccatgaggatgtgcttgcatcaaaagcttgataatctcttccctatcactctctcttcctatta |
18126030 |
T |
|
| Q |
271 |
cacttgaagcatcaac |
286 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
18126031 |
cactcaaagcatcaac |
18126046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 18118138 - 18118267
Alignment:
| Q |
26 |
agttgataattttgataataatgcgcctaatatcaaaatcattggagacacatcc--aaatcttcaattggaaaatatcatctatcctcttatcattgaa |
123 |
Q |
| |
|
||||||| ||||||||||| ||| || |||||| ||||| |||||||||||| | | ||||||||||| |||| ||||| ||||||||||| ||||| |
|
|
| T |
18118138 |
agttgattattttgataattatgtgcataatataaaaataattggagacacagactcacatcttcaattgaaaaaattcatcgatcctcttatcgttgaa |
18118237 |
T |
|
| Q |
124 |
caccaaccttgcaagtgtggtcttccccaa |
153 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
18118238 |
taccaactttgcaagtgtggtcttccccaa |
18118267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 474
Target Start/End: Original strand, 18126105 - 18126234
Alignment:
| Q |
345 |
gcaagtccaaaccttgtcccgtcagctgccaccttattcaatctatttctaatctctttgattttatgtgacatcctaaaacggaaagctggtggatttg |
444 |
Q |
| |
|
|||||||||||| | ||||| || | ||| ||||||| |||||||| ||||| ||||| |||| | || |||||||| ||| ||||| ||| ||| | |
|
|
| T |
18126105 |
gcaagtccaaacttagtcccatcggttgctaccttatccaatctatccctaatatctttaatttgttttgccatcctaagacgaaaagcaagtgaattgg |
18126204 |
T |
|
| Q |
445 |
aggaagaaaacaagtggcataccttcattc |
474 |
Q |
| |
|
||||| | || ||||||| ||||||||||| |
|
|
| T |
18126205 |
aggaacagaagaagtggcgtaccttcattc |
18126234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 49340653 - 49340545
Alignment:
| Q |
73 |
acacatccaaatcttcaattggaaaatatcatctatcctcttatcattgaacaccaaccttgcaagtgtggtcttccccaagccaccaattccaactatg |
172 |
Q |
| |
|
||||| ||| ||||||||| | ||| | ||||||| ||||||||||| ||||| | | |||||||||| || || || || || ||||||||||| || |
|
|
| T |
49340653 |
acacacccacatcttcaatggaaaagtctcatctaaactcttatcattaaacacgacctttgcaagtgtagtttttcctaatcctccaattccaacaata |
49340554 |
T |
|
| Q |
173 |
ggaataaca |
181 |
Q |
| |
|
||||||||| |
|
|
| T |
49340553 |
ggaataaca |
49340545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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