View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5824_low_8 (Length: 563)

Name: NF5824_low_8
Description: NF5824
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5824_low_8
NF5824_low_8
[»] chr7 (2 HSPs)
chr7 (71-498)||(42549748-42550176)
chr7 (1-72)||(42550200-42550270)
[»] scaffold0008 (1 HSPs)
scaffold0008 (335-402)||(117047-117114)
[»] chr5 (2 HSPs)
chr5 (279-374)||(38538272-38538368)
chr5 (496-536)||(31509874-31509914)
[»] chr3 (2 HSPs)
chr3 (324-413)||(55313962-55314050)
chr3 (491-536)||(29644551-29644596)
[»] chr8 (2 HSPs)
chr8 (499-536)||(3669830-3669867)
chr8 (370-414)||(30211827-30211871)


Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 71 - 498
Target Start/End: Complemental strand, 42550176 - 42549748
Alignment:
Q  71 aactatgttcactatcttcgaatatcaagaacaagtcaagaatttaaagactgctatttcgaagaagacatttacaagtaacatcagagttgctcaaaat 170  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||    
T  42550176 aactatgatcactatcttcgaatatcaagaacaagt-aagaatttaaagactgcgatttcgaagaagacaattacaagtaacatcagagttgctcgaaat 42550078  T
Q  171 atttcaaattacataacttctaaaatgagttatataaagtttatctaagaagtttttcaaatcagtagttataggtttttcaatgccaaaaacttaaatt 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42550077 atttcaaattacataacttctaaaatgagttatataaagtttatctaagaagtttttcaaatcagtagttataggtttttcaatgccaaaaacttaaatt 42549978  T
Q  271 tgaagagaaaacttgcacaagaaaacttttgggaagtagaagacacatgacatcatgcaacataggagttgttttattttcttatctataaattgtaaaa 370  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||| |||||||||| ||||||||||    
T  42549977 tgaagagaaaacttgcacaagaaaacttttgagaagtagaagacacatgacatcatgcaacataggagttcgtttattgtcttatctatcaattgtaaaa 42549878  T
Q  371 tcaaacttcaaacaaatgagttcattttcgttctttaaaactatactcaacagataaatacattctatcacagaataacat--gttattgacaccgttaa 468  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  42549877 tcaaatttcatacaaatgagtttattttcgttctttaaaactatactcaacagataaatacactctatcacagaataacatacgttattgacaccgttaa 42549778  T
Q  469 aagaacgatgtatgcaactaacttataatt 498  Q
    ||||||||||||||||||||||||||||||    
T  42549777 aagaacgatgtatgcaactaacttataatt 42549748  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 42550270 - 42550200
Alignment:
Q  1 agttctcccaaacaaaatatatttgccaaaaatttgtagaagcataaataaaaaattggtgttatgtgcgaa 72  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  42550270 agttctcccaaacaaaatatatttgccaaaaatttgtagaagcctaaat-aaaaattgatgttatgtgcgaa 42550200  T

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Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 402
Target Start/End: Original strand, 117047 - 117114
Alignment:
Q  335 ggagttgttttattttcttatctataaattgtaaaatcaaacttcaaacaaatgagttcattttcgtt 402  Q
    ||||||| |||||||| || |||||||||||||||||| |||||||  |||||||| |||||||||||    
T  117047 ggagttggtttatttttttgtctataaattgtaaaatcgaacttcatgcaaatgagatcattttcgtt 117114  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 374
Target Start/End: Complemental strand, 38538368 - 38538272
Alignment:
Q  279 aaacttgcacaagaaaacttttgggaagt-agaagacacatgacat-catgcaacataggagttgttttattttcttatctataaattgtaaaatcaa 374  Q
    ||||||||| ||||| |||  || ||||| |||| ||||||||||| ||||||||||| |||||  ||||||| ||| ||||||||||||||||||||    
T  38538368 aaacttgcagaagaagactcatgagaagttagaaaacacatgacattcatgcaacatatgagttagtttattt-cttgtctataaattgtaaaatcaa 38538272  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 536
Target Start/End: Complemental strand, 31509914 - 31509874
Alignment:
Q  496 attgttgggtcacgaagggagccagggggaccatccacatc 536  Q
    ||||||||||||||| | ||||||||||||||| |||||||    
T  31509914 attgttgggtcacgaggagagccagggggaccacccacatc 31509874  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 324 - 413
Target Start/End: Complemental strand, 55314050 - 55313962
Alignment:
Q  324 catgcaacataggagttgttttattttcttatctataaattgtaaaatcaaacttcaaacaaatgagttcattttcgttctttaaaacta 413  Q
    |||| ||||||| ||||  |||||||| || ||||||||||||||||||||||||||   ||| |||||||||||| |||  ||||||||    
T  55314050 catgtaacatagaagttagtttatttt-ttgtctataaattgtaaaatcaaacttcacgtaaaagagttcattttcattcgataaaacta 55313962  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 536
Target Start/End: Original strand, 29644551 - 29644596
Alignment:
Q  491 ttataattgttgggtcacgaagggagccagggggaccatccacatc 536  Q
    |||||||||||||||||||| |||||   |||||||||||||||||    
T  29644551 ttataattgttgggtcacgaggggagtttgggggaccatccacatc 29644596  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 499 - 536
Target Start/End: Complemental strand, 3669867 - 3669830
Alignment:
Q  499 gttgggtcacgaagggagccagggggaccatccacatc 536  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  3669867 gttgggtcacgaggggagctagggggaccatccacatc 3669830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 414
Target Start/End: Complemental strand, 30211871 - 30211827
Alignment:
Q  370 atcaaacttcaaacaaatgagttcattttcgttctttaaaactat 414  Q
    ||||||||||| ||||||||||||||||| ||||  |||||||||    
T  30211871 atcaaacttcatacaaatgagttcatttttgttcgataaaactat 30211827  T

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