View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5825-Insertion-1 (Length: 1010)
Name: NF5825-Insertion-1
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5825-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 631; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 249 - 1007
Target Start/End: Complemental strand, 25427452 - 25426671
Alignment:
| Q |
249 |
tgaaattaattgaatgattgaaatggcgatgtagatttgcggaataatttagtaccatgaatgatataaatataattaacaggctgtatagtgttgtaga |
348 |
Q |
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| T |
25427452 |
tgaaattaattgaatgattgaaatggcgatgtagatttgccgaataatttagtaccatgattgatataaatataattaacaggctgtatagtgttgtaga |
25427353 |
T |
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| Q |
349 |
tttaaaggatatttactgcatgtgtaaattagtgttaatcagttttacactcgtattcaatactaatgtgtaaat---------------------tcga |
427 |
Q |
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| T |
25427352 |
tttaaaggatatttactgcatgtgtaaattagtattaatcagttttacacttgtattcaatactaatgtgcaaatcagttttacacttgtattatttcga |
25427253 |
T |
|
| Q |
428 |
tagatgatcgttttaaaatttgtaatttgattgccatgcttattaaagcttgtagggtgtgttaagtttactgattgacggcattgatgttgatagttat |
527 |
Q |
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| T |
25427252 |
tagatgatcgttttaaaatttgtaatttgattgacatgcttattaaagcttgtagggtgtgttaagtttactgattgacggcattgatgttgatagttat |
25427153 |
T |
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| Q |
528 |
actctagtgaaaatgttttgaaggattttacagatgtttagtgtatgtgtaaatcaatgttaattacgattacacttacatccaataactatcctgagtt |
627 |
Q |
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| T |
25427152 |
actctagtgaaaatgttttgaaggattttacagatgtttagtgtatgtataaatcaatgttaattacgattacacttacatccaataactatcctgagtt |
25427053 |
T |
|
| Q |
628 |
ttgatacatcaaccctcttttgtaattgcattttaaaattggtgtaatggttttaaaagaatggaggactcattgaattgtaagagtaaaattgatttac |
727 |
Q |
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| T |
25427052 |
ttgatacatcaaccctcttttgtaattgcattttaaaattggtgtaatggttttaaaagaatggaggactcgttgaatgttaagagtaaaattgatttac |
25426953 |
T |
|
| Q |
728 |
atttaccattaatttgattggcatgcttattgaagtatgtgggttgtgttaagttgattgatcgatgcattgatgttgatggttattctctagtgaaggt |
827 |
Q |
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| T |
25426952 |
atttaccattaatttgattggcatgcttattgaagtatgtgggttgtgttaagttgattgatcgatgcattgatgttgatggttattctctagtgaaagt |
25426853 |
T |
|
| Q |
828 |
gttttttatttaattagactatgattgatttgtatagttacataccaatactatgattgatgcactcatgttgatccttttaatgaggcccttgattaat |
927 |
Q |
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| T |
25426852 |
g-tttttgtttaattagactatgattgatttgtatagttacataccaatactatgattgatgcactcatgttgatccttttaatgaggcccttgattaat |
25426754 |
T |
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| Q |
928 |
catagagaacgaatatgatatg-tatgcttg-tcataatatgtaa-ttgatgatctcgtgtaactggaagaagaacacacttt |
1007 |
Q |
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| T |
25426753 |
catagagaacgaatgtgatatgttatgcttgttcataatatgtaatttgatgatctcgtgtaactggaagaagaacacacttt |
25426671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 25427692 - 25427494
Alignment:
| Q |
9 |
aaggaggtgttgcatttgtctacagcaccgtctacgatggtgtgtcgtgaggaagagcaaaatgtggtgttggggttttgtaaaggatgtgttgagcatg |
108 |
Q |
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| T |
25427692 |
aaggaggtgttgcatttgtctacagcaccgtctacgatggtgtgtcgtgaggaagagcaaaatgtggtgttggggttttgtaaagggtgtgttgagcatg |
25427593 |
T |
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| Q |
109 |
aaaaagctgggagtctttatatatgtggctgtcctggaactgggaaatcgttgtcgatggagaaagtgaaagtgaatttgctcaattgggctgcagagg |
207 |
Q |
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| T |
25427592 |
aaaaagctgggagtctttatatatgtggctgtcctggtactgggaaatcgttgtcgatggagaaagtgaaagtgaatttactcaattgggctgcagagg |
25427494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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