View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5825-Insertion-2 (Length: 940)
Name: NF5825-Insertion-2
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5825-Insertion-2 |
 | |
|
| [»] chr2 (7 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 864; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 864; E-Value: 0
Query Start/End: Original strand, 10 - 940
Target Start/End: Complemental strand, 2718852 - 2717925
Alignment:
| Q |
10 |
taacttgacacatacttctcaagcctagaccaccgaatttttggggagcacacaatgtattccagttcacaagatgaggttttttcctctcttcttgatc |
109 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2718852 |
taacttgacacatacttctcaagcctaaaccaccgaatttttggggagtacacaatgtattccagttcacaagatgaggttttttcctctcttcttgatc |
2718753 |
T |
|
| Q |
110 |
ccccaaagaatcctctgcaaatcttgtcatcttcatcataaattcccacccgcaacatcactgtttgcgtaacataagagggaagggcttggagaacaga |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2718752 |
ccccaaagaatcatctgcaaatcttgtcatcttcatcacaaattcccacccgcaacatcactgtttgcgtaacataagagggaagggcttggagaacaga |
2718653 |
T |
|
| Q |
210 |
ttttgtaagagtaactcgtcttgaaaacgacaaagtttttgacttccaagcactaagtggttgattaactctatccaagataaattggtagcacttttag |
309 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2718652 |
ttttgtaagagtaac--gtcttgaaaacgacaaagtttttgacttccaagaactaagtggttgattaactctatccaagataaattggtagtacttttag |
2718555 |
T |
|
| Q |
310 |
agacctttttattaagtataggaactccaagatatttaccactcaaagactgtttctgtttgtttatttatttattcttttgagtatacatcttggatta |
409 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2718554 |
agacctttttatgaagtataggaactccaagatatttaccactcaaagactgtttctgtttgtttatttatttattcttttgagtatgtatcttggatta |
2718455 |
T |
|
| Q |
410 |
taattggaatcagggagaaggaaagaaccaaattcgttgatattgaacacaagacaaagctatccagaaaaccaaaatgcaagtacgattaaaaaatgtg |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2718454 |
taattggaatcagggagaaggaaagaaccaaattcgttgatattgaacacaagacaaagctatccagaaaaccaaaatgcaagtacgattaaaaa-tgtg |
2718356 |
T |
|
| Q |
510 |
aaacaaatcaaaatagaggaccttacattatttgagttccagaaaatttcagctgcaacaaataattttggttcagctaataagattggtcagggtggtt |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2718355 |
aaacaaatcaaaatagaggaccttacattatttgagttccagaaaatttcagctgcaacaaataattttggttcagctaataagattggtcagggtggtt |
2718256 |
T |
|
| Q |
610 |
ttggttcagtgtacaaggtaaactaagtcttgtgaagtttttctttcattaatattctgtattataatgttcttgaaaaaacaatttcagggaaaattgc |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2718255 |
ttggttcagtgtacaaggtaaactaagtcttgtgaagtttttctttcattaatattctgtattataatgttcttgaaaaaacaatttcagggaaaattgc |
2718156 |
T |
|
| Q |
710 |
ccgatggacgagtaatagcagtgaaaagacttgctagaacttcaagccaagggatagaagaatttatgaatgaagtgattgtaatttcagagcttcaaca |
809 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2718155 |
ccggtggacgagaaatagcagtgaaaagacttgctagaacttcaagccaagggatagaagaatttatgaatgaagtgattgtaatttcagagcttcaaca |
2718056 |
T |
|
| Q |
810 |
tcgtaatcttgtaagacttttaggctgctgcatcgaagaggaagaaaaaatgctggtctatgagtatatgcctaataacagtttagatttttatctattt |
909 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2718055 |
tcgtaatcttctaagacttttaggctgctgcatcgaagaggaagaaaaaatgctggtctatgagtatatgcctaataacagtttagatttttatctattt |
2717956 |
T |
|
| Q |
910 |
ggttagtgtacatctaacttgttctttcttc |
940 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2717955 |
ggttagtgtacatctaacttgttctttcttc |
2717925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 376 - 915
Target Start/End: Complemental strand, 2746383 - 2745835
Alignment:
| Q |
376 |
tttatttattcttttgagtatacatcttggattataattggaatcagggagaaggaaagaaccaaattcgttgatattgaacacaagacaaagctatcca |
475 |
Q |
| |
|
||||||||||||||||| ||| || | |||||||||||| |||||| ||||||||| | ||| |||| | | || |||||| |||| | ||||| |
|
|
| T |
2746383 |
tttatttattcttttgattatgtatttgggattataattgaaatcagcaagaaggaaaatagaaaagatgttggtgtcgagcacaaggcaaatccatcca |
2746284 |
T |
|
| Q |
476 |
gaaaaccaaaatgcaagtacgattaaaaaatgtgaaacaaat-caa--aatagaggaccttacattatttgagttccagaaaatttcagctgcaacaaat |
572 |
Q |
| |
|
||||||| |||||||||| ||| ||| |||||||||| | ||| ||||||||||||| | ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
2746283 |
gaaaaccgaaatgcaagtcttattggaaa-tgtgaaacaattgcaacaaatagaggaccttcctttatttgagtttcagaaaatttcaagtgcaacaaat |
2746185 |
T |
|
| Q |
573 |
aattttggttcagctaataagattggtcagggtggttttggttcagtgtacaaggtaaactaagtcttgtgaagtttt--tctttcattaatattctgta |
670 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||| |
|
|
| T |
2746184 |
aatttttgttcacctaataagattggccagggtggttttggttcagtgtacaaggtaaactaagtcatgtgaagtttttatctttgattaatattttgta |
2746085 |
T |
|
| Q |
671 |
ttataatgttct--------tgaaaaaacaatttcagggaaaattgcccgatggacgagtaatagcagtgaaaagacttgctagaacttcaagccaaggg |
762 |
Q |
| |
|
|||| ||||||| ||||||| ||| ||||||| |||| | ||||||| | ||||||||||||||||||| | | | ||| | || ||| |
|
|
| T |
2746084 |
ttat-atgttctcatatttctgaaaaa--aatatcagggagaattacaagatggactggcaatagcagtgaaaagactttcaaaggcatcaggacagggg |
2745988 |
T |
|
| Q |
763 |
atagaagaatttatgaatgaagtgattgtaatttcagagcttcaacatcgtaatcttgtaagacttttaggctgctgcatcgaagaggaagaaaaaatgc |
862 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||| ||||||| |||||||||| |||||||| ||| |
|
|
| T |
2745987 |
ttagaagaatttatgaatgaagtgattgtgatttccaagcttcaacatcgcaatcttgttagacttctaggctgttgcatcgaaggcgaagaaaagatgt |
2745888 |
T |
|
| Q |
863 |
tggtctatgagtatatgcctaataacagtttagatttttatctatttggttag |
915 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2745887 |
tggtctatgagtacatgcctaataacagtttagatttctatctatttggttag |
2745835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 179; E-Value: 4e-96
Query Start/End: Original strand, 376 - 939
Target Start/End: Complemental strand, 2724551 - 2723982
Alignment:
| Q |
376 |
tttatttattcttttgagtatacatcttggattataattggaatcagggagaaggaaagaaccaaattcgttgatattgaacacaagacaaagctatcca |
475 |
Q |
| |
|
||||||||||||||||| ||| || | |||||||||||| |||||| ||||||||| | ||| |||| | | || |||||| |||| | ||||| |
|
|
| T |
2724551 |
tttatttattcttttgattatgaatttgggattataattgaaatcagcaagaaggaaaatagaaaagatgttggtgtcgagcacaaggcaaatccatcca |
2724452 |
T |
|
| Q |
476 |
gaaaaccaaaatgcaagtacgattaaaaaatgtgaaacaaatcaaaatagaggaccttacattatttgagttccagaaaatttcagctgcaacaaataat |
575 |
Q |
| |
|
||||||| |||||||||| ||| ||| |||||||||| | ||||| ||||||||| | ||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
2724451 |
gaaaaccgaaatgcaagtcttattggaaa-tgtgaaacaagttaaaattgaggaccttcctttatttgagtttcagaaaatttcaactgcaacaaataat |
2724353 |
T |
|
| Q |
576 |
tttggttcagctaataagattggtcagggtggttttggttcagtgtacaaggtaaactaagtcttgtgaagttttt--ctttcattaatattctgtatta |
673 |
Q |
| |
|
||||||||| | ||||||||||| || |||||||||||||||| ||||||||||||||||||| || ||||| ||| |||| ||||||||| ||||||| |
|
|
| T |
2724352 |
tttggttcaccaaataagattggccaaggtggttttggttcagcgtacaaggtaaactaagtcatgggaagtctttatctttgattaatattttgtatta |
2724253 |
T |
|
| Q |
674 |
taatgttct---------tgaaaaaacaatttcagggaaaattgcccgatggacgagtaatagcagtgaaaagacttgctagaacttcaagccaagggat |
764 |
Q |
| |
|
|| |||||| ||||||| || ||||||| |||| | ||||||| | ||||||||||||||||||| | | ||||| | || ||| | |
|
|
| T |
2724252 |
ta-tgttctcatatttcctgaaaaat--atatcagggagaattacaagatggactggaaatagcagtgaaaagactttcaaaggcttcaggacaggggct |
2724156 |
T |
|
| Q |
765 |
agaagaatttatgaatgaagtgattgtaatttcagagcttcaacatcgtaatcttgtaagacttttaggctgctgcatcgaagaggaagaaaaaatgctg |
864 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||| ||||| |||||||||| |||||||| ||| || |
|
|
| T |
2724155 |
agaagaatttatgaatgaagtgattgtgatttccaagcttcaacatcgcaatcttgttagacttttgggctgttgcatcgaaggcgaagaaaagatgttg |
2724056 |
T |
|
| Q |
865 |
gtctatgagtatatgcctaataacagtttagatttttatctatttggttagtgtacatc-taacttgttctttctt |
939 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||| | ||||| |||||||||||||||| |
|
|
| T |
2724055 |
gtctatgagtacatgcctaataacagtttagatttctatctatttggtta--gcacatcttaacttgttctttctt |
2723982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 503 - 916
Target Start/End: Complemental strand, 2713353 - 2712925
Alignment:
| Q |
503 |
aaatgtgaaacaaatcaaaatagaggaccttacattatttgagttccagaaaatttcagctgcaacaaataattttggttcagctaataagattggtcag |
602 |
Q |
| |
|
||||||||||||| |||||||| |||||| | ||||| |||||| | || |||| | | ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2713353 |
aaatgtgaaacaagctaaaatagaagaccttcctttattcgagttcaaaaatattttatcagcaacaaataactttggttcagctaataagattggtcaa |
2713254 |
T |
|
| Q |
603 |
ggtggttttggttcagtgtacaaggtaaactaagtcttgtgaagttttt--------ctttcattaatattctgtattataa--------tgttcttgaa |
686 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| | ||||| ||||| |||||||| | ||||| | | |||||||| |
|
|
| T |
2713253 |
ggtggttttggttcagtgtacaaggtaaactaaatcttgtcatttttttttttttatctttc-ttaatattttctattaaagattttcatttttcttgaa |
2713155 |
T |
|
| Q |
687 |
aaaacaatttcagggaaaattgcccgatggacgagtaatagcagtgaaaagacttgctagaac-ttcaagccaagggatagaagaatttatgaatgaagt |
785 |
Q |
| |
|
||||||||||||||| ||||| ||||||| || |||||| |||||||||||| | |||| ||||| |||||| |||||||||||||||| ||||| |
|
|
| T |
2713154 |
aaaacaatttcagggggaattgttagatggacaagaaatagccgtgaaaagactttc-agaaggttcaacacaagggttagaagaatttatgaacgaagt |
2713056 |
T |
|
| Q |
786 |
gattgtaatttcagagcttcaacatcgtaatcttgtaagacttttaggctgctgcatcgaagaggaagaaaaaatgctggtctatgagtatatgcctaat |
885 |
Q |
| |
|
|||||| |||||| ||||||||||||| ||||||||||||||| |||| || |||||||||| ||||||||||||| |||||||||| || ||||| ||| |
|
|
| T |
2713055 |
gattgtgatttcaaagcttcaacatcgcaatcttgtaagacttctaggttgttgcatcgaaggggaagaaaaaatgttggtctatgaatacatgccgaat |
2712956 |
T |
|
| Q |
886 |
aacagtttagatttttatctatttggttagt |
916 |
Q |
| |
|
|| |||||||||||||| ||||||||||||| |
|
|
| T |
2712955 |
aatagtttagatttttacctatttggttagt |
2712925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 764 - 926
Target Start/End: Complemental strand, 2708153 - 2707991
Alignment:
| Q |
764 |
tagaagaatttatgaatgaagtgattgtaatttcagagcttcaacatcgtaatcttgtaagacttttaggctgctgcatcgaagaggaagaaaaaatgct |
863 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||||||| |||| |||||||| |||| ||| ||||| ||| | |
|
|
| T |
2708153 |
tagaagaatttatgaatgaagtgattgttatatcaaagcttcaacatcgcaatcttgtaagacttctaggttgctgcattgaaggggacgaaaagatgtt |
2708054 |
T |
|
| Q |
864 |
ggtctatgagtatatgcctaataacagtttagatttttatctatttggttagtgtacatctaa |
926 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2708053 |
ggtctatgagtacatgcctaataacagtttagatttttatctatttggttagtgtacatctaa |
2707991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 505 - 632
Target Start/End: Complemental strand, 2708418 - 2708291
Alignment:
| Q |
505 |
atgtgaaacaaatcaaaatagaggaccttacattatttgagttccagaaaatttcagctgcaacaaataattttggttcagctaataagattggtcaggg |
604 |
Q |
| |
|
|||||||||| | ||||||||||||||| | |||||||| ||| | | |||||| | ||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
2708418 |
atgtgaaacaggttaaaatagaggaccttcctttatttgaattcaaaattatttcatcggcaacaaataactttggttcgactaataagattggtcaggg |
2708319 |
T |
|
| Q |
605 |
tggttttggttcagtgtacaaggtaaac |
632 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
|
|
| T |
2708318 |
tggttttggttcggtgtacaaggtaaac |
2708291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 41639027 - 41639080
Alignment:
| Q |
10 |
taacttgacacatacttctcaagcctagaccaccgaatttttggggagcacaca |
63 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
41639027 |
taacttgacgcatacttctcaagcctagttcaccgaattttttgggagtacaca |
41639080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 757 - 847
Target Start/End: Complemental strand, 20005887 - 20005797
Alignment:
| Q |
757 |
caagggatagaagaatttatgaatgaagtgattgtaatttcagagcttcaacatcgtaatcttgtaagacttttaggctgctgcatcgaag |
847 |
Q |
| |
|
|||||| |||||||||| ||||||||||| | || ||||| ||||||| || || ||||||||||||||| ||||||||||||| |||| |
|
|
| T |
20005887 |
caagggttagaagaattcatgaatgaagtcgtagtgatttctaagcttcagcaccgcaatcttgtaagacttgtaggctgctgcattgaag |
20005797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 828
Target Start/End: Complemental strand, 20063153 - 20063019
Alignment:
| Q |
694 |
tttcagggaaaattgcccgatggacgagtaatagcagtgaaaagacttgctagaacttcaagccaagggatagaagaatttatgaatgaagtgattgtaa |
793 |
Q |
| |
|
|||||||| ||| ||| ||||| |||| ||||||||| ||||||||| || || | || |||||||| |||||||||| ||||||||||| | || |
|
|
| T |
20063153 |
tttcaggggaaactgcaagatggtcgagaaatagcagttaaaagactttctcgagcatctggccaagggctagaagaattcatgaatgaagtagtggtcc |
20063054 |
T |
|
| Q |
794 |
tttcagagcttcaacatcgtaatcttgtaagactt |
828 |
Q |
| |
|
||| |||||||||| |||||||||||||||||| |
|
|
| T |
20063053 |
tttgtaagcttcaacaccgtaatcttgtaagactt |
20063019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 757 - 828
Target Start/End: Complemental strand, 4120959 - 4120888
Alignment:
| Q |
757 |
caagggatagaagaatttatgaatgaagtgattgtaatttcagagcttcaacatcgtaatcttgtaagactt |
828 |
Q |
| |
|
||||| ||||||||||||||||| ||||| | || ||||| | ||||||||||||||||||||||||||| |
|
|
| T |
4120959 |
caaggaatagaagaatttatgaacgaagtagtagtgatttctaaacttcaacatcgtaatcttgtaagactt |
4120888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 757 - 839
Target Start/End: Complemental strand, 4151669 - 4151587
Alignment:
| Q |
757 |
caagggatagaagaatttatgaatgaagtgattgtaatttcagagcttcaacatcgtaatcttgtaagacttttaggctgctg |
839 |
Q |
| |
|
||||| ||||||||||| ||||||||||| | || ||||| | ||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
4151669 |
caaggaatagaagaattcatgaatgaagttgtagtgatttctaaacttcaacatcgcaatcttgtgagacttttaggttgctg |
4151587 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 757 - 828
Target Start/End: Complemental strand, 4131222 - 4131151
Alignment:
| Q |
757 |
caagggatagaagaatttatgaatgaagtgattgtaatttcagagcttcaacatcgtaatcttgtaagactt |
828 |
Q |
| |
|
||||| ||||||||||| ||||||||||| | || ||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
4131222 |
caaggaatagaagaattcatgaatgaagttgtagtgatttctaaacttcaacatcgcaatcttgtaagactt |
4131151 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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