View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5825-Insertion-4 (Length: 401)
Name: NF5825-Insertion-4
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5825-Insertion-4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 142 - 401
Target Start/End: Original strand, 4069525 - 4069782
Alignment:
| Q |
142 |
cataaatcaatatagtgtagtttcagacttgttcaccttttatactaatgtttgtttattatatagtttataaaagaaatgatttttacatttttaagag |
241 |
Q |
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| T |
4069525 |
cataaatcaatatagtgtagtttca--cttgttcaccttttatactaagggttgtttattatatagtttataaaagaaatgatttttacatttttaagag |
4069622 |
T |
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| Q |
242 |
tcaaagaagcatgaatatatcttacacaatttgatgtgggttccaaagaattttgtagtcatgaaaatcagttgtgggatcaaaccaaaggtggattttt |
341 |
Q |
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| T |
4069623 |
tcaaaggagcatgaatatatcttacacaatttgatgtgggttccaaagaattttgtagtcatgaaaatcagttgtgggatcaaaccaaaggtggattttt |
4069722 |
T |
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| Q |
342 |
tgctctctatccccttcaccatttgcccatacattggtttgtaatgcatatggtttccct |
401 |
Q |
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| T |
4069723 |
tgctctctatccccttcaccatttgcccatacattggtttgtaatgcatatggtttccct |
4069782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 4069393 - 4069460
Alignment:
| Q |
9 |
cctaatggggatattgtccacataaaatctgccaagccaagttttgatcagatttgaaattatgtatag |
77 |
Q |
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| T |
4069393 |
cctaatggggatattgtccacataaaatctgc-aagccaagttttgatcagatttgaaattatgtatag |
4069460 |
T |
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