View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5825_high_3 (Length: 442)
Name: NF5825_high_3
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5825_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 211 - 425
Target Start/End: Complemental strand, 26367136 - 26366922
Alignment:
| Q |
211 |
atattaaccctagaaaatactaaagaacattttaagattaatttcttttactagattaaataattacctgaattcctgaagctctatgttgtgcataact |
310 |
Q |
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| T |
26367136 |
atattaaccctagaaaatactaaagaacattttaacattaatttcttttactagattaaataattacctaaattcctgaagctctatgttgtgcataact |
26367037 |
T |
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| Q |
311 |
gcaggaactcatatggtctttcttgtcctgaatattgctggaggacttggagttctattgatgtttacaccatttttgactgaaaagaagaaaacaccct |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26367036 |
gcaggaactcatatggtctttcttgtcctgaatattgctggaggacttggagttctattgatgtttacaccatttttgactgaaaagaagaaaacaccct |
26366937 |
T |
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| Q |
411 |
ctcagcagttacact |
425 |
Q |
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||||||||||||||| |
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| T |
26366936 |
ctcagcagttacact |
26366922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 26367792 - 26367657
Alignment:
| Q |
13 |
aatatattgaaaacagtataatatattcagttttcttattctg--atatgatattttgttcattccagattagcttggtcacaaaaacggatgaatgcat |
110 |
Q |
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| T |
26367792 |
aatatattgaaaacagtataatatattcagttttcttattctctaatatgatattttgttcattccagattagcttggtcacaaaaacggatgaatgcat |
26367693 |
T |
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| Q |
111 |
cttttctcccaggtatgatgttcaactaattttaat |
146 |
Q |
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| T |
26367692 |
cttttctcccaggtatgatgttcaactaattttaat |
26367657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 26367535 - 26367462
Alignment:
| Q |
143 |
taatagaaagaaaaactgcaacaatagaatgatatatgaactcttctatgaattcagactaatagaaaatatta |
216 |
Q |
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| T |
26367535 |
taatagaaagaaaaactgcaacaatagaatgagatatgaactattctatgaattcagactgatagaaaatatta |
26367462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 6e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 224 - 425
Target Start/End: Original strand, 2611148 - 2611349
Alignment:
| Q |
224 |
aaaatactaaagaacattttaagattaatttcttttactagattaaataattacctgaattcctgaagctctatgttgtgcataactgcaggaactcata |
323 |
Q |
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|||||||| |||| |||||||| |||||||| ||||||||||| | || ||||||||||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
2611148 |
aaaatacttaagagcattttaacattaatttattttactagatatattagttacctgaattcctgaacctctatgcggtgcataactgcagggactcata |
2611247 |
T |
|
| Q |
324 |
tggtctttcttgtcctgaatattgctggaggacttggagttctattgatgtttacaccatttttgactgaaaagaagaaaacaccctctcagcagttaca |
423 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2611248 |
tggtattttttgtcctgaatattgctggaggacttggagttctattgatgtttacgccatttttgactgaaaaaaagaaaacaccctctcagcagttaca |
2611347 |
T |
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| Q |
424 |
ct |
425 |
Q |
| |
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|| |
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|
| T |
2611348 |
ct |
2611349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 2610843 - 2610968
Alignment:
| Q |
14 |
atatattgaaaacagtataatatattcagttttcttattctgatatgatattttgttcattccagattagcttggtcacaaaaacggatgaatgcatctt |
113 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||| |
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| T |
2610843 |
atatattgaaaacaatataatatattcagttttcttattctgatat-----tttgttcattc-agattagcttggtcacaaaaacggatgcacgcatctt |
2610936 |
T |
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| Q |
114 |
ttctcccaggtatgatgttcaactaattttaa |
145 |
Q |
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||||||||||||||||| |||||||||||||| |
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| T |
2610937 |
ttctcccaggtatgatgctcaactaattttaa |
2610968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 2611087 - 2611139
Alignment:
| Q |
143 |
taatagaaagaaaaactgcaacaatagaatgatatatgaactcttctatgaat |
195 |
Q |
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|||||||||||||| |||||||| |||||||| ||| |||||||||||||||| |
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| T |
2611087 |
taatagaaagaaaagctgcaacagtagaatgacataggaactcttctatgaat |
2611139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 39163437 - 39163489
Alignment:
| Q |
76 |
cagattagcttggtcacaaaaacggatgaatgcatcttttctcccaggtatga |
128 |
Q |
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| T |
39163437 |
cagattagcatggtcacaaaagcggttaaatgcttctttcctcccaggtatga |
39163489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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