View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5825_high_4 (Length: 428)
Name: NF5825_high_4
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5825_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 153 - 418
Target Start/End: Original strand, 4069525 - 4069788
Alignment:
| Q |
153 |
cataaatcaatatagtgtagtttcagacttgttcaccttttatactaatgtttgtttattatatagtttataaaagaaatgatttttacatttttaagag |
252 |
Q |
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| T |
4069525 |
cataaatcaatatagtgtagtttca--cttgttcaccttttatactaagggttgtttattatatagtttataaaagaaatgatttttacatttttaagag |
4069622 |
T |
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| Q |
253 |
tcaaagaagcatgaatatatcttacacaatttgatgtgggttccaaagaattttgtagtcatgaaaatcagttgtgggatcaaaccaaaggtggattttt |
352 |
Q |
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| T |
4069623 |
tcaaaggagcatgaatatatcttacacaatttgatgtgggttccaaagaattttgtagtcatgaaaatcagttgtgggatcaaaccaaaggtggattttt |
4069722 |
T |
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| Q |
353 |
tgctctctatccccttcaccatttgcccatacattggtttgtaatgcatatggtttcccttctctg |
418 |
Q |
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| T |
4069723 |
tgctctctatccccttcaccatttgcccatacattggtttgtaatgcatatggtttcccttctctg |
4069788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 4069393 - 4069460
Alignment:
| Q |
20 |
cctaatggggatattgtccacataaaatctgccaagccaagttttgatcagatttgaaattatgtatag |
88 |
Q |
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| T |
4069393 |
cctaatggggatattgtccacataaaatctgc-aagccaagttttgatcagatttgaaattatgtatag |
4069460 |
T |
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