View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5825_high_8 (Length: 359)
Name: NF5825_high_8
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5825_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 6 - 341
Target Start/End: Original strand, 25427357 - 25427692
Alignment:
| Q |
6 |
caacaatatacagcctgttaattatatttatatcattcatggtactaaattattccgcaaatctacatcgccatttcaatcattcaattaatttcaatat |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25427357 |
caacactatacagcctgttaattatatttatatcaatcatggtactaaattattcggcaaatctacatcgccatttcaatcattcaattaatttcaatat |
25427456 |
T |
|
| Q |
106 |
acataaataaataagtatagatatagatatcgatatacctctgcagcccaattgagcaaattcactttcactttctccatcgacaacgatttcccagttc |
205 |
Q |
| |
|
||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
25427457 |
acacaaataaataagtctagatatagatatagatatacctctgcagcccaattgagtaaattcactttcactttctccatcgacaacgatttcccagtac |
25427556 |
T |
|
| Q |
206 |
caggacagccacatatataaagactcccagctttttcatgctcaacacatcctttacaaaaccccaacaccacattttgctcttcctcacgacacaccat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25427557 |
caggacagccacatatataaagactcccagctttttcatgctcaacacaccctttacaaaaccccaacaccacattttgctcttcctcacgacacaccat |
25427656 |
T |
|
| Q |
306 |
cgtagacggtgctgtagacaaatgcaacacctcctt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
25427657 |
cgtagacggtgctgtagacaaatgcaacacctcctt |
25427692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University