View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5825_high_9 (Length: 327)
Name: NF5825_high_9
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5825_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 88 - 322
Target Start/End: Original strand, 15398555 - 15398789
Alignment:
| Q |
88 |
ttatcaacacatggctagaagtcgcaatacaacgttgtgttgagaagtttgatctcaagctgtatttccacatcttgaagcccatcattttcatctccaa |
187 |
Q |
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| T |
15398555 |
ttatcaacacattgctagaagtcgcaatacaacgtcgtgttgagaagtttgatctcaagctgtgtttccacaccttgaagcccatcattttcatctccaa |
15398654 |
T |
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| Q |
188 |
aacactaactattctcaaactttcgatgttaaacattggaaatgatacttcgggcgttaatcttccatctctgaaatccctgaagttgaattacgttagc |
287 |
Q |
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| T |
15398655 |
aacactaactattctcaaacttttgatgttaaaagttggaaatgatacttcgtgcgttaatcttccatctctgaaatccctgaagttgaatcgcgttaga |
15398754 |
T |
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| Q |
288 |
tttcaaaattggaacgattacataaactttctttc |
322 |
Q |
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| T |
15398755 |
tttgaaaattggaacgattacataaactttctttc |
15398789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 88 - 322
Target Start/End: Original strand, 15410342 - 15410576
Alignment:
| Q |
88 |
ttatcaacacatggctagaagtcgcaatacaacgttgtgttgagaagtttgatctcaagctgtatttccacatcttgaagcccatcattttcatctccaa |
187 |
Q |
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| T |
15410342 |
ttatcaacacattgctagaagtcgcaatacaacgtcgtgttgagaagtttgatctcaagctgtgtttccacaccttgaagcccatcattttcatctccaa |
15410441 |
T |
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| Q |
188 |
aacactaactattctcaaactttcgatgttaaacattggaaatgatacttcgggcgttaatcttccatctctgaaatccctgaagttgaattacgttagc |
287 |
Q |
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| T |
15410442 |
aacactaactattctcaaacttttgatgttaaaagttggaaatgatacttcgtgcgttaatcttccatctctgaaatccctgaagttgaatcgcgttaga |
15410541 |
T |
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| Q |
288 |
tttcaaaattggaacgattacataaactttctttc |
322 |
Q |
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| T |
15410542 |
tttgaaaattggaacgattacataaactttctttc |
15410576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 15398377 - 15398451
Alignment:
| Q |
17 |
aataacctcatgatccatcctctttcaatcaaccaggctcatcccctcaaaacatttcgcttcaaacaatgttat |
91 |
Q |
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| T |
15398377 |
aataacctcatgatccatcctctttcaatcaaccaggctcatcccctcaaaacgtttcgcttcaaacaatgttat |
15398451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 15410164 - 15410238
Alignment:
| Q |
17 |
aataacctcatgatccatcctctttcaatcaaccaggctcatcccctcaaaacatttcgcttcaaacaatgttat |
91 |
Q |
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| T |
15410164 |
aataacctcatgatccatcctctttcaatcaaccaggctcatcccctcaaaacgtttcgcttcaaacaatgttat |
15410238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 37997419 - 37997249
Alignment:
| Q |
98 |
atggctagaagtcgcaatacaacgttgtgttgagaagtttgatctcaagctgtatttccacatcttgaagcccatcattttcatctccaaaacactaact |
197 |
Q |
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|||||||||||| |||| || ||| |||||||| | ||| | |||| | | |||| ||||| |||||||||||| |||||||||||| |||| || | |
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| T |
37997419 |
atggctagaagttgcaaaacggcgtcgtgttgaggaatttcacctcacgttatattaccacaacttgaagcccattattttcatctcccaaacccttgtt |
37997320 |
T |
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| Q |
198 |
attctcaaactttcgatgttaaacattggaaatgatacttcgggcgttaatcttccatctctgaaatccct |
268 |
Q |
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| T |
37997319 |
gttctcaaacttaaaaggttaaatgttggaaatgatactttgtgtgttgatcttccatcgctgaaaaccct |
37997249 |
T |
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