View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5825_low_13 (Length: 254)
Name: NF5825_low_13
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5825_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 41086779 - 41087016
Alignment:
| Q |
1 |
ctaaattttttggggttacattgtatatctaatatctttagtatgttcgtcttaacttcttttattaatnnnnnnntatatcattagtcttcttttcttg |
100 |
Q |
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| T |
41086779 |
ctaaattttttggggttacattgtatatctaatatctttagtatgtttgtcttaacttcttttattaataaaaaaatatatcattagtcttcttttcttg |
41086878 |
T |
|
| Q |
101 |
acagcaacgtcattagtatgttctcaaaagaaattttggttgactgagatttcaagaagaatcaaattttgtgcaatagatattgtgataatatccttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41086879 |
acagcaacgtcattagtatgttctcaaaagaaattttggttgactgagatttcaagaagaatcaaattttgtgcaatagatattgtgataatatccttcc |
41086978 |
T |
|
| Q |
201 |
ccaccgaacattgattagcttggtatgaactggtctgt |
238 |
Q |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
41086979 |
ccaccaaacattgattagcttggtatgaactggtctgt |
41087016 |
T |
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