View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5825_low_15 (Length: 226)
Name: NF5825_low_15
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5825_low_15 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 43190864 - 43190645
Alignment:
| Q |
1 |
tcatcacacaccttcattatatctattaatcttcaaacacaggaacctcaaaattcaattcaaccaaaatccaattcttcattcaacagatcaaatctat |
100 |
Q |
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| T |
43190864 |
tcatcacacaccttcattatatctattaatcttcaaacacaggaacctcaaaattcaattcaaccaaaatccaattcttcattcaacagatcaaatctat |
43190765 |
T |
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| Q |
101 |
aaatcagcaacaatcaacaattgattaattccctacaaaattcgtcgacggcaacatcatgaatctgaatcatcataaataaattcataaacaattatga |
200 |
Q |
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| T |
43190764 |
gaatcagcaacaagcaacaattgattaattccctacaaaattcgtcgacggcaacatcatg------aatcatcataaacaaatccataaacaattatga |
43190671 |
T |
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| Q |
201 |
atcaacatttaaatccatcaatccat |
226 |
Q |
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| T |
43190670 |
atcaacatttaaatccatcaatccat |
43190645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 19193888 - 19193948
Alignment:
| Q |
27 |
taatcttcaaacacaggaacctcaaaattcaattcaaccaaaatccaattcttcattcaac |
87 |
Q |
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| T |
19193888 |
taatcttcaaactcagaaacctcaaaattcaattcaactaaaatccaattcttcattcaac |
19193948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 43193701 - 43193645
Alignment:
| Q |
32 |
ttcaaacacaggaacctcaaaattcaattcaaccaaaatccaattcttcattcaaca |
88 |
Q |
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| T |
43193701 |
ttcaaacacagaaatctcaaaattcaattcaaccaaaatccaattcttcaatcaaca |
43193645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 87
Target Start/End: Original strand, 53623171 - 53623252
Alignment:
| Q |
6 |
acacaccttcattatatctattaatcttcaaacacaggaacctcaaaattcaattcaaccaaaatccaattcttcattcaac |
87 |
Q |
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| T |
53623171 |
acacaccttcattatatttattaatcttcaaacccaatattctcaaaattcaatttaaccaaaatccaattcttctttcaac |
53623252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 142264 - 142310
Alignment:
| Q |
27 |
taatcttcaaacacaggaacctcaaaattcaattcaaccaaaatcca |
73 |
Q |
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| T |
142264 |
taatcttcaaactcagaaacctcaaaattcaattcaactaaaatcca |
142310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 27850573 - 27850523
Alignment:
| Q |
8 |
acaccttcattatatctattaatcttcaaacacaggaacctcaaaattcaa |
58 |
Q |
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| T |
27850573 |
acaccttcattatatttattaatcttcaaacccaataacctcaaaattcaa |
27850523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 2076992 - 2076948
Alignment:
| Q |
27 |
taatcttcaaacacaggaacctcaaaattcaattcaaccaaaatc |
71 |
Q |
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| T |
2076992 |
taatcttcaaactcagaaacctcaaaattcaattcaactaaaatc |
2076948 |
T |
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