View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5825_low_2 (Length: 655)
Name: NF5825_low_2
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5825_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 19 - 645
Target Start/End: Original strand, 42221373 - 42221999
Alignment:
| Q |
19 |
caataagctattagcatgtttattttacatttttcacccctgaaaaaattagcagaggaacaaaattattttgtttgtgaatttaaatacatctcataac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42221373 |
caataagctattagcatgtttattttacatttttcacccctgaaaaaattagcagaggaacaaaattattttgtttgtgaatttaaatacatctcataac |
42221472 |
T |
|
| Q |
119 |
ttttttgagattcctatttatgtataannnnnnnaagggaccacatgaggcttattacaaatagcaggcatcagaccaacttcacaagcctagtatatac |
218 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42221473 |
ttttttgagattcctatttatgtataatttttttaagggaccacatgaggcttattacaaatagcaggcatcagaccaacttcacaagcctagtatatac |
42221572 |
T |
|
| Q |
219 |
cgcttaatttcatgcaattttgataaggcttctctcatggtccaccgatctttgggacgatgtgctacacatgataagccaactctcattgcagcagtta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42221573 |
cgcttaatttcatgcaattttgataaggcttctctcatggtccaccgatctttgggacgatgtgctacacatgataagccaactctcattgcagcagtta |
42221672 |
T |
|
| Q |
319 |
tgcattcttcagctttatacatccaatgtgcattactatcatcactgtagctgatgttgccagactcactactatgactatcaccgctggaattttgtgt |
418 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42221673 |
tgcattcttcagctttatacatccaatgtgctttactatcatcactgtaactgatgttgccagactcactactatgactatcaccgctggaattttgtgt |
42221772 |
T |
|
| Q |
419 |
catatattcgtaacggttaacaagtctttgatcaacaaccttcaataattgcttttcatccatgtctgatgcaaatctgttcatgcttaattcctctttg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42221773 |
catatattcgtaacggttaacaagtctttgatcaacaaccttcaataattgcttttcatccatgtctgatgcaaatctgttcatgcttaattcctctttg |
42221872 |
T |
|
| Q |
519 |
aaaatttcatttgttggttttttggctatgaacatctccaatagtaggatcccaaaactgtacacatcaccactagttgaagccttgcctcctagaccat |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42221873 |
aaaatttcatttgttggttttttggctatgaacatctccaatagtaggatcccaaaactgtacacatcaccactagttgaagccttgcctcctagaccat |
42221972 |
T |
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| Q |
619 |
attctgaaacatggtaccccagtatta |
645 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
42221973 |
attctgaaacatggtaccccagtatta |
42221999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 179 - 645
Target Start/End: Original strand, 42209282 - 42209748
Alignment:
| Q |
179 |
atagcaggcatcagaccaacttcacaagcctagtatataccgcttaatttcatgcaattttgataaggcttctctcatggtccaccgatctttgggacga |
278 |
Q |
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|||||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
42209282 |
atagcaggcatcagaccaacatcacaagcctagtatagactgcttaattccatgcaattttgataaggcttctctcatggtacaccgatctttgggatga |
42209381 |
T |
|
| Q |
279 |
tgtgctacacatgataagccaactctcattgcagcagttatgcattcttcagctttatacatccaatgtgcattactatcatcactgtagctgatgttgc |
378 |
Q |
| |
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|| |||| |||||| |||||||||||||| | || || |||||| || |||||||| | |||||||||||| |||||| ||||||| ||||||||| ||| |
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| T |
42209382 |
tgggctatacatgacaagccaactctcatagtagtagctatgcactcctcagctttgtgcatccaatgtgcgttactaccatcactatagctgatgctgc |
42209481 |
T |
|
| Q |
379 |
cagactcactactatgactatcaccgctggaattttgtgtcatatattcgtaacggttaacaagtctttgatcaacaaccttcaataattgcttttcatc |
478 |
Q |
| |
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||||||||| |||||||||||||| ||| ||| |||||||| ||||||||| |||||| ||| ||||||||||||||||| | ||||||||| ||||| |
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| T |
42209482 |
cagactcaccactatgactatcactgcttgaaatttgtgtcgaatattcgtattggttaataagcctttgatcaacaacctttagtaattgcttgtcatc |
42209581 |
T |
|
| Q |
479 |
catgtctgatgcaaatctgttcatgcttaattcctctttgaaaatttcatttgttggttttttggctatgaacatctccaatagtaggatcccaaaactg |
578 |
Q |
| |
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|||||||||| |||||||||||||||||| ||| |||||||| ||||| ||||||||||||| ||||| |||||||| | ||||| ||||||||||||| |
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| T |
42209582 |
catgtctgatacaaatctgttcatgcttacttcttctttgaacatttcgtttgttggtttttcagctatcaacatctctagtagtaagatcccaaaactg |
42209681 |
T |
|
| Q |
579 |
tacacatcaccactagttgaagccttgcctcctagaccatattctgaaacatggtaccccagtatta |
645 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| |
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| T |
42209682 |
tacacatcaccactagttgaagccttgcctcctaaaccatattctgaaacatgtcaccccaatatta |
42209748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 444 - 630
Target Start/End: Original strand, 42190946 - 42191132
Alignment:
| Q |
444 |
ctttgatcaacaaccttcaataattgcttttcatccatgtctgatgcaaatctgttcatgcttaattcctctttgaaaatttcatttgttggttttttgg |
543 |
Q |
| |
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||||||||||||||||||| ||||| ||| |||||||| | |||| ||||| | |||||||||||| | ||||||||||| |||| |||||||||| ||| |
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| T |
42190946 |
ctttgatcaacaaccttcagtaatttcttctcatccatttatgatacaaattttttcatgcttaatccttctttgaaaatctcatctgttggttttctgg |
42191045 |
T |
|
| Q |
544 |
ctatgaacatctccaatagtaggatcccaaaactgtacacatcaccactagttgaagccttgcctcctagaccatattctgaaacat |
630 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
42191046 |
ctatgaacatctctaacagtaggatcccaaaactgtacacatcaccactagttgaagcctttccacctagaccatattctgaaacat |
42191132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 42209150 - 42209200
Alignment:
| Q |
86 |
attttgtttgtgaatttaaatacatctcataacttttttgagattcctatt |
136 |
Q |
| |
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||||||||||| | ||||||||||| |||||||| || ||||||||||||| |
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| T |
42209150 |
attttgtttgtcattttaaatacatttcataactattatgagattcctatt |
42209200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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