View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5825_low_6 (Length: 396)
Name: NF5825_low_6
Description: NF5825
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5825_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 125 - 378
Target Start/End: Complemental strand, 13465190 - 13464927
Alignment:
| Q |
125 |
ttcactatcaaactactaagtgttgtctaaactaatccttactattcattcctaaaatactaatag-tggtattcctaaaattt---------ctaagac |
214 |
Q |
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| T |
13465190 |
ttcactatcaaactactaagtgt---ctaaactaatccttactattcattcctaaaatactaattcctaaaatttctaactttttttttttatctaagac |
13465094 |
T |
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| Q |
215 |
tccaatttcaaataaatacactagttttaggagttaaataggtctatggcaggttaaatatttatcaatttctatgatttga---acatcacttaacaat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
13465093 |
tccaatttcaaataaatacactagttttaggagttaaataggtctatggcaggttaaatatttatcaatttctatgatttaaattacatcacttaacaat |
13464994 |
T |
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| Q |
312 |
acttttccacttgcatttgcttgtaannnnnnnngtttctaagacaacaatggcgagactacataat |
378 |
Q |
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| T |
13464993 |
acttttccacttgcatttgcttgtaattttttttgtttctaagacaacaatggcgagactacataat |
13464927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 15054019 - 15054079
Alignment:
| Q |
59 |
cttcacagaccttacgtatgcgggagttttagtgcaccaacatgctctttttacctatttt |
119 |
Q |
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| T |
15054019 |
cttcacggaccttacgtatgcgggaactttagtgcaccggcctgcgctttttacctatttt |
15054079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 31694161 - 31694119
Alignment:
| Q |
55 |
actccttcacagaccttacgtatgcgggagttttagtgcacca |
97 |
Q |
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| T |
31694161 |
actccttcccagaccttgcgtatgcgggagatttagtgcacca |
31694119 |
T |
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