View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5826-Insertion-2 (Length: 615)
Name: NF5826-Insertion-2
Description: NF5826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5826-Insertion-2 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 214 - 615
Target Start/End: Original strand, 2815720 - 2816120
Alignment:
| Q |
214 |
ttttaaattacaaagtaaaatatttaaaccgacctattcacttctcacgtgatcatggctctaaactcaaatctagctttattcataaaacaaaatagcc |
313 |
Q |
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| T |
2815720 |
tttttaattacaaagtaaaatatttaaaccgacctattcacttctcacgtgatcatggctctaaactcaaatctagctttattcataaaacaaaatagcc |
2815819 |
T |
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| Q |
314 |
ttatctagtaagaaagaaccaaggagccaatcccaaattttgcatctgaaaaattatcacattagagaatcctcaactcaaatctaaacaaatgtacaat |
413 |
Q |
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| T |
2815820 |
t-atctagtaagaaagaaccaaggagccaatcccaaattttgcatctgaaaaattatcacattagagaatcctcaactcaaatctaaacaaatgtacaat |
2815918 |
T |
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| Q |
414 |
ctaaacttcatcaatcaaatcatggaaccnnnnnnnngagaactatttggaatcaactcaagtatattccaattcaaaaactttcttgattttttcttat |
513 |
Q |
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| T |
2815919 |
ctaaacttcatcaatcaaatcatggaaccaaaaaaaagagaactatttggaatcaactcaagtatattccaattcaaaaactttcttgattttttcttat |
2816018 |
T |
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| Q |
514 |
ttggacaaagataagataaccatcatcgttagatatgcgggattgacttagaccgaataaggtttttaagtagagctttctcttcatcaattttctgttt |
613 |
Q |
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| T |
2816019 |
ttggacaaagataagataaccatcatcgttagatatgcgggattgacttagaccgaataagatttttaagtagagctttctcttcatcaattttctgttt |
2816118 |
T |
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| Q |
614 |
ct |
615 |
Q |
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| T |
2816119 |
ct |
2816120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 94 - 196
Target Start/End: Original strand, 2815626 - 2815728
Alignment:
| Q |
94 |
tcatgcggtattatattttcatagactatttcaagataggtccaaataagttcttccaaacaccacagcatcaaggttcattgtggttgtaaaattttta |
193 |
Q |
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| T |
2815626 |
tcatgcggtattatattttcataaactatttcaagataggtccaaataagttcttccaaacaccacagcatcaaagttcattgtggttgtagaattttta |
2815725 |
T |
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| Q |
194 |
att |
196 |
Q |
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| T |
2815726 |
att |
2815728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 513 - 615
Target Start/End: Original strand, 5436111 - 5436213
Alignment:
| Q |
513 |
tttggacaaagataagataaccatcatcgttagatatgcgggattgacttagaccgaataaggtttttaagtagagctttctcttcatcaattttctgtt |
612 |
Q |
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| T |
5436111 |
tttggacaaagataggagaaacatcatcgttagatacttgggatagattttgaccgaataaggtttttaagaagagctttctcttcatcaattctctgtt |
5436210 |
T |
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| Q |
613 |
tct |
615 |
Q |
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||| |
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| T |
5436211 |
tct |
5436213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 2815157 - 2815237
Alignment:
| Q |
9 |
aaagggatagaaagatatgagaattaatatatgacatcggctacaaacaaaatcaatcagatatataaagatactgagattgaattca |
96 |
Q |
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| T |
2815157 |
aaagggatagaaaaatatgagaatt-------gacatcggctacaaacaaaatcaatcagatatataaagatattgagattgaattca |
2815237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 534 - 615
Target Start/End: Original strand, 5428868 - 5428949
Alignment:
| Q |
534 |
catcatcgttagatatgcgggattgacttagaccgaataaggtttttaagtagagctttctcttcatcaattttctgtttct |
615 |
Q |
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| T |
5428868 |
catcatccttagatacttgggatggattttgatcgaataaggtttttaagtagagctttctcttcttcaattttccgtttct |
5428949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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