View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5826-Insertion-3 (Length: 368)
Name: NF5826-Insertion-3
Description: NF5826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5826-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 332
Target Start/End: Original strand, 42221373 - 42221696
Alignment:
| Q |
9 |
caataagctattagcatgtttattttacatttttcacccctgaaaaaattagcagaggaacaaaattattttgtttgtgaatttaaatacatctcataac |
108 |
Q |
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| T |
42221373 |
caataagctattagcatgtttattttacatttttcacccctgaaaaaattagcagaggaacaaaattattttgtttgtgaatttaaatacatctcataac |
42221472 |
T |
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| Q |
109 |
ttttttgagattcctatttatgtataannnnnnnaagggaccacatgaggcttattacaaatagcaggcatcagaccaacttcacaagcctagtatatac |
208 |
Q |
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| T |
42221473 |
ttttttgagattcctatttatgtataatttttttaagggaccacatgaggcttattacaaatagcaggcatcagaccaacttcacaagcctagtatatac |
42221572 |
T |
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| Q |
209 |
cgcttaatttcatgcaattttgataaggcttctctcatggtccaccgatctttgggacgatgtgctacacatgataagccaactctcattgcagcagtta |
308 |
Q |
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| T |
42221573 |
cgcttaatttcatgcaattttgataaggcttctctcatggtccaccgatctttgggacgatgtgctacacatgataagccaactctcattgcagcagtta |
42221672 |
T |
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| Q |
309 |
tgcattcttcagctttatacatcc |
332 |
Q |
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| T |
42221673 |
tgcattcttcagctttatacatcc |
42221696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 169 - 324
Target Start/End: Original strand, 42209282 - 42209437
Alignment:
| Q |
169 |
atagcaggcatcagaccaacttcacaagcctagtatataccgcttaatttcatgcaattttgataaggcttctctcatggtccaccgatctttgggacga |
268 |
Q |
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| T |
42209282 |
atagcaggcatcagaccaacatcacaagcctagtatagactgcttaattccatgcaattttgataaggcttctctcatggtacaccgatctttgggatga |
42209381 |
T |
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| Q |
269 |
tgtgctacacatgataagccaactctcattgcagcagttatgcattcttcagcttt |
324 |
Q |
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| T |
42209382 |
tgggctatacatgacaagccaactctcatagtagtagctatgcactcctcagcttt |
42209437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 42209150 - 42209200
Alignment:
| Q |
76 |
attttgtttgtgaatttaaatacatctcataacttttttgagattcctatt |
126 |
Q |
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||||||||||| | ||||||||||| |||||||| || ||||||||||||| |
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| T |
42209150 |
attttgtttgtcattttaaatacatttcataactattatgagattcctatt |
42209200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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