View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5826_low_1 (Length: 454)
Name: NF5826_low_1
Description: NF5826
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5826_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 55077301 - 55076966
Alignment:
| Q |
13 |
aatattcacaattccccttagcctcttagctccgccaatgaaacgccccaacggttcaacccccattgacattatagcaagcacaaatgcattaatcatt |
112 |
Q |
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| T |
55077301 |
aatattcacaatcccccatagcctcttagctccgccaatgaaacgccccaacggttcaacccccaacgacattatagcaagcacaaatgcattaatcatt |
55077202 |
T |
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| Q |
113 |
agtcctaacgctccggcgcgcacaccagcggcataggtattatctccaacattgccaccatacacttcacgacccatccaatcagtgtcgaacaagaaaa |
212 |
Q |
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| T |
55077201 |
agtcccaacgctcccgcgcgcacaccagcggcataggtattatctccaacattgccaccatacacttcacgacccatccaatcagtatcgaacaagaaaa |
55077102 |
T |
|
| Q |
213 |
atgggaaccatgctacccaatttatagcggttactatcattagcatccacattggtttctttaatccactaaaagcacttaacaactccccgaagcagcc |
312 |
Q |
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| T |
55077101 |
atgggaaccatgctacccaatttatagcggttactatcattagcatccacattggtttctttaatccactaaaagcacttaacaactccccgaagcagcc |
55077002 |
T |
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| Q |
313 |
gacgtcatcctataaattatcaacattgactattgt |
348 |
Q |
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| T |
55077001 |
gacgtcatcctataaattacaaacattgacaattgt |
55076966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 55076942 - 55076873
Alignment:
| Q |
370 |
tggaggggacacaagttaattacctttgattgtgattgtggttttgattggagcggaatgtcttctacgt |
439 |
Q |
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| T |
55076942 |
tggaggggacgcaagttaattacctttgattgtgattgtggttttgattggagcggaatgtcttcaacgt |
55076873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 42340970 - 42340914
Alignment:
| Q |
176 |
acttcacgacccatccaatcagtgtcgaacaagaaaaatgggaaccatgctacccaa |
232 |
Q |
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| T |
42340970 |
acttcacggcccatccaatcagtgttgaataaagaaaataggaaccatgcaacccaa |
42340914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 15124683 - 15124933
Alignment:
| Q |
14 |
atattcacaattccccttagcctcttagctccgccaatgaaacgccccaacggttcaacccccattgacattatagcaagcacaaatgcattaatcatta |
113 |
Q |
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||||||||||| |||| || ||||| || || |||| |||||||| || ||||| || ||| ||||| | |||||||||||| ||||| | ||||| |
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| T |
15124683 |
atattcacaatcccccaaagtctcttcgcgcccccaactaaacgccctaatggttccactgccaacgacataaaagcaagcacaaaagcattcagcatta |
15124782 |
T |
|
| Q |
114 |
gtcctaacgctccggcgcgcacaccagcggcataggtattatctccaacattgccaccatacacttcacgacccatccaatcagtgtcgaacaagaaaaa |
213 |
Q |
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| T |
15124783 |
gtcccaacgctccaacacgcactcctttgctatatgcattatctcctggtttgccaccgtatacttcttgacccatccaatcagtgtcgaacaagaagaa |
15124882 |
T |
|
| Q |
214 |
tgggaaccatgctacccaatttatagcggttactatcattagcatccacat |
264 |
Q |
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| T |
15124883 |
cggaaaccatgcaacccaattgatcgcggtaaccaacatcagcatccacat |
15124933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 277
Target Start/End: Complemental strand, 10932650 - 10932546
Alignment:
| Q |
173 |
tacacttcacgacccatccaatcagtgtcgaacaagaaaaatgggaaccatgctacccaatttatagcggttactatcattagcatccacattggtttct |
272 |
Q |
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||||| ||||| |||||||| ||||||||||||||||| || |||||||| || | ||| || | || ||||||| ||| | |||||||||||| ||| |
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| T |
10932650 |
tacacctcacggcccatccagtcagtgtcgaacaagaagaacgggaaccacgcgatccagttcacggctgttactaacatcaatatccacattggtctct |
10932551 |
T |
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| Q |
273 |
ttaat |
277 |
Q |
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||||| |
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| T |
10932550 |
ttaat |
10932546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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