View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5827-Insertion-1 (Length: 280)
Name: NF5827-Insertion-1
Description: NF5827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5827-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 49739707 - 49739979
Alignment:
| Q |
8 |
aagctagccatttatgatttatatatggtttaaacattaaatgcaccttggaacaacatgagctctttgaataagggnnnnnnntgtatatggaaagtat |
107 |
Q |
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| T |
49739707 |
aagctagccatttatgatttatatatggtttaaacattaaatgcaccttggaacaacatgtgctctttgaataagggaaaaaaatgtatatggaaagtat |
49739806 |
T |
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| Q |
108 |
cacacaccatccactaattaaattaacacttggaagttgtaatcattcatccttgaattatgtttgaactatgaatagatatcaaatttcaactgtagtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49739807 |
cacacaccatccactaattaaattaacacttggaagttgtaatcattcatccttgaattatgtttgaactatgaatagatatcaaatttcaactgtagtt |
49739906 |
T |
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| Q |
208 |
agatggttctagactatctgagaagnnnnnnnncccctgttatttgtcactttaatagtgtacggtacagttc |
280 |
Q |
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| T |
49739907 |
agatggttctagactatctgagaagttttttttcccctgttatttgtcactttaatagtgtacggtacagttc |
49739979 |
T |
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