View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5827-Insertion-3 (Length: 555)
Name: NF5827-Insertion-3
Description: NF5827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5827-Insertion-3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 157 - 555
Target Start/End: Original strand, 23940401 - 23940799
Alignment:
| Q |
157 |
tagttatttacctaatgatcacaaagtttattatcctttgcagctttttcttattctggtgttggatttgtaggagcaatggtgactcaattctcaatca |
256 |
Q |
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| T |
23940401 |
tagttatttacctaaagatcacaaagtttattatcctttgcagctttttcttattctggtgttggatttgtaggagcaatggtgacacaattctcaatca |
23940500 |
T |
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| Q |
257 |
aactcttgtattcattggagagaagcagacttacaatcaacatagtccaattatcataaaagccatcgaactttggaatagaaggatgcacgtaattcgt |
356 |
Q |
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| T |
23940501 |
aactcttgtattcattggagagaagcagactttcaatcaacatagcccaatgatcataaaagccatcaaactttggaatagaaggatgcacgtaattcgt |
23940600 |
T |
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| Q |
357 |
ggattcttgcatataaaagagcaagggagttgatcaatcttggtcaaggatgaaggaaaatgagttgcagaagaacaatggaagaacaaagaagaaagat |
456 |
Q |
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| T |
23940601 |
ggattcttgcatataaaagagcaagggagttgatcaatcttggtcaaggatgaaggaaaatgagttgcagaagaacaatggaagaacaaagaagaaagat |
23940700 |
T |
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| Q |
457 |
gaaggttggttaagaaacaaatcaatctaactaactcataactgaatttgctgccaaaagttgcacttttcaagctctagttacaatgcccaatgaagg |
555 |
Q |
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| T |
23940701 |
gaaggttggttaagaaacaaatcaatctaactaactcataactgaatttgccgccaaaagttgcacttttcaagctctagttacaatgcccaatgaagg |
23940799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 9 - 160
Target Start/End: Original strand, 23939431 - 23939582
Alignment:
| Q |
9 |
ctatgattatgatgaaaaacactcttgacatctaattgatatacatcaatggaaacttcgtttgtctagttcttgactagagcactctagttccatccct |
108 |
Q |
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| T |
23939431 |
ctatgattatgatgaaaagcactcttgacatctaattgatatgcatcaatggaaacctcgtttgtctagttcttgactagagcactctagttccatccct |
23939530 |
T |
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| Q |
109 |
tagtttgttcaaagatgtcatctctttttatcactgttttcttgcttttagt |
160 |
Q |
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| T |
23939531 |
tagtttgttcaaatatgtcatctctttttatcactgttttcttgcttttagt |
23939582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 20541833 - 20541777
Alignment:
| Q |
180 |
aagtttattatcctttgcagctttttcttattctggtgttggatttgtaggagcaat |
236 |
Q |
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| T |
20541833 |
aagtttactatcctttgcagctttttcttgttctggtgttggattttcaggagcaat |
20541777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 16862882 - 16862820
Alignment:
| Q |
180 |
aagtttattatcctttgcagctttttcttattctggtgttggatttgtaggagcaatggtgac |
242 |
Q |
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| T |
16862882 |
aagtttactatcctttgcagctttttcttgttctggtgttggattctcaagagcaatggtgac |
16862820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 40613488 - 40613544
Alignment:
| Q |
180 |
aagtttattatcctttgcagctttttcttattctggtgttggatttgtaggagcaat |
236 |
Q |
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| T |
40613488 |
aagtttactatcctttgcaaaattttcttgttctggtgttggattttcaggagcaat |
40613544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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