View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5827_low_3 (Length: 408)
Name: NF5827_low_3
Description: NF5827
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5827_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 49739712 - 49740110
Alignment:
| Q |
1 |
agccatttatgatttatatatggtttaaacattaaatgcaccttggaacaacatgagctctttgaataagggnnnnnnntgtatatggaaagtatcacac |
100 |
Q |
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| T |
49739712 |
agccatttatgatttatatatggtttaaacattaaatgcaccttggaacaacatgtgctctttgaataagggaaaaaaatgtatatggaaagtatcacac |
49739811 |
T |
|
| Q |
101 |
accatccactaattaaattaacacttggaagttgtaatcattcatccttgaattatgtttgaactatgaatagatatcaaatttcaactgtagttagatg |
200 |
Q |
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| T |
49739812 |
accatccactaattaaattaacacttggaagttgtaatcattcatccttgaattatgtttgaactatgaatagatatcaaatttcaactgtagttagatg |
49739911 |
T |
|
| Q |
201 |
gttctagactatctgagaagnnnnnnnncccctgttatttgtcactttaatagtgtacggtacagttcctttgatatcacatgaagtaaattaagaaatt |
300 |
Q |
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| T |
49739912 |
gttctagactatctgagaagttttttttcccctgttatttgtcactttaatagtgtacggtacagttcctttgatatcacatgaagtaaattaagaaatt |
49740011 |
T |
|
| Q |
301 |
gctttaaaatttatattttcaattccatttttagctcttcaagcataactctttaatcaatccattgcttacataaatatgaacctttccaagaataat |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49740012 |
gctttaaaatttatattttcaattccatttttagctcttcaagcataactctttaatcaatccattgcttacataaatatgaacctttccaagcataat |
49740110 |
T |
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