View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5828_high_1 (Length: 426)

Name: NF5828_high_1
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5828_high_1
NF5828_high_1
[»] chr4 (21 HSPs)
chr4 (28-239)||(1147719-1147932)
chr4 (321-409)||(1147954-1148042)
chr4 (29-123)||(3074590-3074684)
chr4 (28-117)||(53692900-53692989)
chr4 (28-117)||(17359352-17359441)
chr4 (11-108)||(24104479-24104576)
chr4 (11-123)||(12211086-12211198)
chr4 (24-108)||(21753504-21753588)
chr4 (28-123)||(4325631-4325726)
chr4 (38-88)||(31002622-31002672)
chr4 (33-80)||(44157746-44157793)
chr4 (31-120)||(26449803-26449892)
chr4 (28-71)||(31944836-31944879)
chr4 (338-395)||(1133094-1133151)
chr4 (45-75)||(29528213-29528243)
chr4 (22-80)||(48131083-48131141)
chr4 (257-289)||(1185171-1185203)
chr4 (51-123)||(12679712-12679784)
chr4 (32-80)||(25931865-25931913)
chr4 (31-75)||(36381351-36381395)
chr4 (32-80)||(40530197-40530245)
[»] chr8 (14 HSPs)
chr8 (16-123)||(13152254-13152361)
chr8 (31-123)||(9256612-9256704)
chr8 (28-88)||(42447144-42447204)
chr8 (22-123)||(21958726-21958829)
chr8 (10-76)||(10467953-10468019)
chr8 (24-76)||(24333933-24333985)
chr8 (11-123)||(28846808-28846920)
chr8 (11-62)||(2826227-2826278)
chr8 (22-80)||(3436306-3436365)
chr8 (22-80)||(40469904-40469962)
chr8 (31-108)||(40145885-40145962)
chr8 (28-76)||(27190991-27191039)
chr8 (33-80)||(7279149-7279196)
chr8 (38-123)||(23403189-23403274)
[»] chr6 (8 HSPs)
chr6 (28-123)||(30621385-30621480)
chr6 (28-123)||(32441834-32441929)
chr6 (24-122)||(25599371-25599469)
chr6 (24-108)||(12180395-12180479)
chr6 (16-99)||(11971167-11971250)
chr6 (31-123)||(12648930-12649023)
chr6 (34-75)||(34253226-34253267)
chr6 (22-63)||(31028008-31028049)
[»] chr1 (19 HSPs)
chr1 (27-123)||(52753675-52753771)
chr1 (28-111)||(48606484-48606567)
chr1 (28-116)||(14499117-14499206)
chr1 (16-88)||(25017594-25017666)
chr1 (27-77)||(33490456-33490506)
chr1 (39-123)||(40864578-40864662)
chr1 (39-115)||(49465378-49465454)
chr1 (28-109)||(30055041-30055122)
chr1 (28-123)||(42309899-42309994)
chr1 (30-80)||(32981048-32981098)
chr1 (22-78)||(26272834-26272890)
chr1 (28-108)||(30558880-30558960)
chr1 (16-80)||(11843798-11843864)
chr1 (30-80)||(320712-320762)
chr1 (22-80)||(41971292-41971350)
chr1 (22-80)||(170355-170415)
chr1 (22-78)||(15209329-15209383)
chr1 (28-88)||(9637344-9637404)
chr1 (28-84)||(32379756-32379812)
[»] chr5 (11 HSPs)
chr5 (28-117)||(3055702-3055791)
chr5 (29-123)||(22712760-22712854)
chr5 (22-80)||(28801947-28802005)
chr5 (28-88)||(1280801-1280861)
chr5 (28-80)||(23244473-23244525)
chr5 (16-108)||(8785990-8786079)
chr5 (30-88)||(27168698-27168756)
chr5 (28-117)||(192849-192938)
chr5 (45-88)||(15730868-15730911)
chr5 (31-80)||(13819086-13819135)
chr5 (32-80)||(1775375-1775423)
[»] chr3 (13 HSPs)
chr3 (16-117)||(50091475-50091576)
chr3 (16-123)||(3856727-3856834)
chr3 (16-88)||(43137334-43137406)
chr3 (28-123)||(24988673-24988768)
chr3 (16-88)||(42269133-42269205)
chr3 (26-117)||(9743486-9743577)
chr3 (28-123)||(17073852-17073947)
chr3 (17-88)||(37381763-37381835)
chr3 (22-77)||(5136364-5136419)
chr3 (38-123)||(34083076-34083161)
chr3 (45-124)||(15668182-15668259)
chr3 (48-108)||(42964773-42964833)
chr3 (40-108)||(51262210-51262278)
[»] chr2 (12 HSPs)
chr2 (16-117)||(31393003-31393104)
chr2 (45-111)||(30547162-30547228)
chr2 (28-117)||(12539793-12539882)
chr2 (22-79)||(26238687-26238744)
chr2 (31-88)||(27925640-27925697)
chr2 (26-124)||(4554295-4554393)
chr2 (29-88)||(19951727-19951786)
chr2 (34-80)||(18982653-18982699)
chr2 (51-117)||(35649541-35649607)
chr2 (30-80)||(45122216-45122266)
chr2 (29-88)||(45261740-45261799)
chr2 (22-80)||(18425857-18425917)
[»] chr7 (13 HSPs)
chr7 (28-123)||(9230619-9230714)
chr7 (25-107)||(25491510-25491592)
chr7 (45-115)||(26782179-26782249)
chr7 (16-108)||(9557896-9557988)
chr7 (33-123)||(18375628-18375717)
chr7 (28-126)||(25024742-25024840)
chr7 (28-108)||(47729943-47730023)
chr7 (16-75)||(34468376-34468435)
chr7 (16-88)||(40703005-40703077)
chr7 (22-76)||(11019616-11019670)
chr7 (34-123)||(23179746-23179833)
chr7 (32-80)||(8395287-8395335)
chr7 (32-80)||(36631938-36631986)
[»] scaffold0198 (1 HSPs)
scaffold0198 (26-123)||(1614-1711)
[»] scaffold0015 (1 HSPs)
scaffold0015 (22-123)||(214019-214122)
[»] scaffold0002 (1 HSPs)
scaffold0002 (24-76)||(435256-435308)
[»] scaffold0178 (1 HSPs)
scaffold0178 (26-108)||(17958-18040)
[»] scaffold0726 (1 HSPs)
scaffold0726 (47-123)||(1122-1198)
[»] scaffold0154 (1 HSPs)
scaffold0154 (16-80)||(32281-32345)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 1147719 - 1147932
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccacttata 127  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||| |||||||||||| | || |||||||||||||||||||||| |||||||||    
T  1147719 ttttattttgatttataactatttatatattatgtagcatgtgaatttgtgatcaaaatttagcacagactcgataaaattcctagctccgccacttata 1147818  T
Q  128 acagttgattggtattgaaaacttgttttgccaaaatataccg--atcaatccgaccctttgagcaatcctacttccatgcaactagttcaatcattttt 225  Q
    |||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1147819 acagttgattggtattgataacttgttttgccaaaatataccgatatcaatccgaccctttgagcaatcctacttccatgcaactagttcaatcattttt 1147918  T
Q  226 atatatcaaacttg 239  Q
    ||||||||||||||    
T  1147919 atatatcaaacttg 1147932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 321 - 409
Target Start/End: Original strand, 1147954 - 1148042
Alignment:
Q  321 aggatggtggagttcctatgaaatagtttatctttatcaaaagaaagtaaaattagcttgtttctgcttctttataaatagccaaaggt 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1147954 aggatggtggagttcctatgaaatagtttatctttatcaaaagaaagtaaaattagcttgtttctgcttctttataaatacccaaaggt 1148042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 3074590 - 3074684
Alignment:
Q  29 tttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    |||||||| |||||| |||||||||||||||||||| |||||||||| |  ||||||||| ||||| |||||||||||||||||||||| |||||    
T  3074590 tttatttcgatttatgactatttatatattatgtcgtatgtgaatttacagtcaaaattttacccagactcgataaaattcctagctccgccact 3074684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 53692989 - 53692900
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctcc 117  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| || |||||||   |||||||||||||||||| |||||||    
T  53692989 ttttatttcgatttatgactatttatatattatgtcgcatgtgaatttgcaattaaaattttgtccaaactcgataaaattcttagctcc 53692900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 17359352 - 17359441
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctcc 117  Q
    ||||||||| |||||| | ||||||||||||||||| |||||||||||||  |||||||||  | ||  ||||||||||||||| |||||    
T  17359352 ttttatttcgatttatgattatttatatattatgtcacatgtgaatttgcagtcaaaattttgcacatgctcgataaaattccttgctcc 17359441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 24104576 - 24104479
Alignment:
Q  11 ataatatgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaatt 108  Q
    |||| ||||| | ||| |||||||||  | ||| ||| ||||||||||||||| ||||||||| |||| ||||||||| |||||| ||||||||||||    
T  24104576 ataaaatgacgagcctcttttatttcgttctatgactgtttatatattatgtcacatgtgaatatgcggtcaaaattttacccaagctcgataaaatt 24104479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 12211198 - 12211086
Alignment:
Q  11 ataatatgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcc 110  Q
    |||| ||||| || || ||||||||| |||||| | ||||||||||||||||| |||||||||||||||| ||  |||  |||||||||  ||||||||     
T  12211198 ataaaatgacgaatcttttttatttcgatttatgattatttatatattatgtcacatgtgaatttgcgataaattttttgcccaaactctgtaaaattca 12211099  T
Q  111 tagctccaccact 123  Q
    | ||||| |||||    
T  12211098 tggctccgccact 12211086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 21753588 - 21753504
Alignment:
Q  24 cctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaatt 108  Q
    ||||||||||||| |||||||| |||||||||||||||||  |||||||||| |  ||||||||| || ||  ||||||||||||    
T  21753588 cctattttatttcgatttataattatttatatattatgtcatatgtgaatttacagtcaaaattttactcaggctcgataaaatt 21753504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 4325631 - 4325726
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    |||||||| ||||||| |||||||||||||||| || ||||| |||||||| |||||||||  ||||  |||||| ||||| || ||||| |||||    
T  4325631 ttttatttaaatttatgactatttatatattatatcacatgtaaatttgcggtcaaaattttgcccatgctcgatgaaatttctggctccgccact 4325726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 31002672 - 31002622
Alignment:
Q  38 atttataactatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    |||||| ||||||||||||||||||| |||||||||||||| |||||||||    
T  31002672 atttatgactatttatatattatgtcacatgtgaatttgcggtcaaaattt 31002622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 44157746 - 44157793
Alignment:
Q  33 tttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||||||||||||| || |||||||||||| ||||||||||||||||    
T  44157746 tttcaatttataactgttgatatattatgtcacatgtgaatttgcgat 44157793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 26449803 - 26449892
Alignment:
Q  31 tatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccacc 120  Q
    ||||| ||||||||| | |||||||||||| || |||||||||||||||| ||  |||  ||| | ||| ||||| ||||||||||||||    
T  26449803 tatttgaatttataattgtttatatattatctcacatgtgaatttgcgataaattttttgcccgagctccataaatttcctagctccacc 26449892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 31944836 - 31944879
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtga 71  Q
    |||||||||||||| | | |||||||||||||||||||||||||    
T  31944836 ttttatttcaatttttgattatttatatattatgtcgcatgtga 31944879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 395
Target Start/End: Original strand, 1133094 - 1133151
Alignment:
Q  338 atgaaatagtttatctttatcaaaagaaagtaaaa-ttagcttgtttctgcttctttat 395  Q
    ||||||||||||||||||  |||||||||| |||| ||||| |||||||||||||||||    
T  1133094 atgaaatagtttatctttc-caaaagaaagaaaaaattagcctgtttctgcttctttat 1133151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 29528243 - 29528213
Alignment:
Q  45 actatttatatattatgtcgcatgtgaattt 75  Q
    |||||||||||||||||||||||||||||||    
T  29528243 actatttatatattatgtcgcatgtgaattt 29528213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 48131083 - 48131141
Alignment:
Q  22 aacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||| ||||||||| |||||| | | ||||||||||||||| ||||| ||||||||||    
T  48131083 aaccttttttatttcgatttatgaatgtttatatattatgtcacatgttaatttgcgat 48131141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 1185171 - 1185203
Alignment:
Q  257 attatctagctgtcaaattcaaattaagaaatt 289  Q
    ||||||||||| |||||||||||||||||||||    
T  1185171 attatctagctatcaaattcaaattaagaaatt 1185203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 12679784 - 12679712
Alignment:
Q  51 tatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    ||||||||||||| |||||||||||||||| ||  ||| |||||| ||| ||  ||||||| ||||| |||||    
T  12679784 tatatattatgtcacatgtgaatttgcgataaatttttcacccaagctctatgtaattcctggctccgccact 12679712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 25931865 - 25931913
Alignment:
Q  32 atttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||| |||||| ||| ||||||||||||||| ||||||||||| ||||    
T  25931865 atttcgatttatgactgtttatatattatgtcacatgtgaatttacgat 25931913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 36381395 - 36381351
Alignment:
Q  31 tatttcaatttataactatttatatattatgtcgcatgtgaattt 75  Q
    |||||| |||||| ||| ||||||||||||||| |||||||||||    
T  36381395 tatttcgatttatgactgtttatatattatgtcacatgtgaattt 36381351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 40530197 - 40530245
Alignment:
Q  32 atttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||| |||||| ||| ||||||||||||||| ||||||||||| ||||    
T  40530197 atttcgatttatgactgtttatatattatgtcacatgtgaatttacgat 40530245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 13152361 - 13152254
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagct 115  Q
    ||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||    
T  13152361 atgacaagcctattttatttcaatttatgattatttatatattatgtcgcatgtgaatttgcgatcaaaattttgcccagactcgataaaattcctagct 13152262  T
Q  116 ccaccact 123  Q
    || |||||    
T  13152261 ccgccact 13152254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 9256612 - 9256704
Alignment:
Q  31 tatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||| ||||||| |||||    
T  9256612 tattttaatttatgactatttatatattatgtcgcacgtgaatttgcgatcaaaattttatccagactcgataaaattcttagctccgccact 9256704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 42447144 - 42447204
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    ||||||||| |||||| ||| ||||||||||||||| ||||||||||||||||||||||||    
T  42447144 ttttatttcgatttatgactgtttatatattatgtcacatgtgaatttgcgatcaaaattt 42447204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 21958726 - 21958829
Alignment:
Q  22 aacctattttatttcaatttataactatttata--tattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccac 119  Q
    ||||| ||||||||| |||||| ||||||||||  ||||||||| ||| |||||||||||| ||  |||  ||||| ||| ||||||||||||||||| |    
T  21958726 aacctcttttatttcgatttatgactatttatatatattatgtcacatatgaatttgcgataaactttttgcccaagctctataaaattcctagctccgc 21958825  T
Q  120 cact 123  Q
    ||||    
T  21958826 cact 21958829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 10467953 - 10468019
Alignment:
Q  10 aataatatgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttg 76  Q
    ||||| ||||| | ||| ||||||||| |||||| |||||||||||||||| |||||||||||||||    
T  10467953 aataaaatgacgagcctcttttatttcgatttatgactatttatatattatttcgcatgtgaatttg 10468019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 24333933 - 24333985
Alignment:
Q  24 cctattttatttcaatttataactatttatatattatgtcgcatgtgaatttg 76  Q
    ||||||||||||| |||||| |||||||||||||||| || ||||||||||||    
T  24333933 cctattttatttcgatttatgactatttatatattatatcacatgtgaatttg 24333985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 28846808 - 28846920
Alignment:
Q  11 ataatatgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcc 110  Q
    |||| ||||| || || ||||||||| |||||| |||||||||||||||| || |||||||||||  | | |||||||  | ||||||| |||||||||     
T  28846808 ataaaatgacgaatctcttttatttcgatttatgactatttatatattatatcacatgtgaatttatggttaaaattttgcacaaactctataaaattct 28846907  T
Q  111 tagctccaccact 123  Q
    |  ||||||||||    
T  28846908 tgactccaccact 28846920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 2826278 - 2826227
Alignment:
Q  11 ataatatgacaaacctattttatttcaatttataactatttatatattatgt 62  Q
    |||| ||||||||||||||||||||  |||||| ||||||||||||||||||    
T  2826278 ataaaatgacaaacctattttattttgatttatgactatttatatattatgt 2826227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 3436306 - 3436365
Alignment:
Q  22 aacctattttattt-caatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    |||||||||||||| | |||||| ||| ||||||||||||||| ||||||||||||||||    
T  3436306 aacctattttattttcgatttatgactgtttatatattatgtcacatgtgaatttgcgat 3436365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 40469962 - 40469904
Alignment:
Q  22 aacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||| ||||||||| |||||| ||| |||||||||||| |||||||||||||| ||||    
T  40469962 aacctcttttatttcgatttatgactgtttatatattatatcgcatgtgaatttacgat 40469904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 40145962 - 40145885
Alignment:
Q  31 tatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaatt 108  Q
    |||||| |||||| | ||||||||||||||||| ||| | |||||||| |||||||||  |||||| || ||||||||    
T  40145962 tatttcgatttatgattatttatatattatgtcacatataaatttgcggtcaaaattttgcccaaaatctataaaatt 40145885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 27190991 - 27191039
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttg 76  Q
    |||||||| ||||||| |||||||||||||||||||  |||||||||||    
T  27190991 ttttattttaatttatgactatttatatattatgtcatatgtgaatttg 27191039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 7279149 - 7279196
Alignment:
Q  33 tttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||||||||| | | || |||||||||||||||||||||||||||||    
T  7279149 tttcaatttatgattgttgatatattatgtcgcatgtgaatttgcgat 7279196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 123
Target Start/End: Original strand, 23403189 - 23403274
Alignment:
Q  38 atttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    |||||| |||||| |||||||||||| |||||||||||| ||  |||||||  ||| | ||| ||||| ||||| ||||| |||||    
T  23403189 atttatgactattgatatattatgtcacatgtgaatttgggaaaaaaatttcgcccgagctccataaatttcctggctccgccact 23403274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 30621385 - 30621480
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||| |||||    
T  30621385 ttttattttgatttatgactatttatatattatgtcgcatgtgaatttgcgatcaaaactttgcccaaactcgataaaattcctagctccgccact 30621480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 32441929 - 32441834
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| |  ||| |||||||| ||| |||| |||||    
T  32441929 ttttatttcgatttatgactatttatatattatgtcgcatgtgaatttgcaatcaaaattttaccgaggctccataaaatttctaactccgccact 32441834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 25599371 - 25599469
Alignment:
Q  24 cctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccac 122  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||  ||||  ||||||||| ||  ||||||| ||||    
T  25599371 cctattttatttcgatttatgactatttatatatcatgtcgcatgtgaatttgcggtcaaaattttgcccaggctcgataaattttttagctccgccac 25599469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 12180479 - 12180395
Alignment:
Q  24 cctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaatt 108  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||| |||| | ||  ||| |  ||||||||||||||||    
T  12180479 cctattttatttcgatttatgactatttatatattatgtcgcatgtgaatctgcggtaaattttttattcaaactcgataaaatt 12180395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 11971167 - 11971250
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactc 99  Q
    ||||||||||| |||||| |  |||||| ||||||||||||||||||| |||||||||||||| | |||||||  |||||||||    
T  11971167 atgacaaacctcttttatcttgatttatgactatttatatattatgtcacatgtgaatttgcggttaaaattttgcccaaactc 11971250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 123
Target Start/End: Original strand, 12648930 - 12649023
Alignment:
Q  31 tatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaa-tttaacccaaactcgataaaattcctagctccaccact 123  Q
    |||||| || ||| ||||||||||||||||| | ||||| |||||| | |||||| |||  |||| |||| ||||||||||||||||| |||||    
T  12648930 tatttcgatgtatgactatttatatattatgccacatgtaaatttgtggtcaaaattttcgcccatactcaataaaattcctagctccgccact 12649023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 34253226 - 34253267
Alignment:
Q  34 ttcaatttataactatttatatattatgtcgcatgtgaattt 75  Q
    ||||| |||||||||||||||||||||||| |||||||||||    
T  34253226 ttcaaattataactatttatatattatgtcacatgtgaattt 34253267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 31028049 - 31028008
Alignment:
Q  22 aacctattttatttcaatttataactatttatatattatgtc 63  Q
    ||||| ||||||||| |||||| |||||||||||||||||||    
T  31028049 aacctcttttatttcgatttatgactatttatatattatgtc 31028008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 52753771 - 52753675
Alignment:
Q  27 attttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||| ||||||||| |||| |||||    
T  52753771 attttatttcgatttatgactatttatatattatgtcgcatgtgaatttacgatcaaaattttgtccaaactcgattaaattcctatctccgccact 52753675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 48606567 - 48606484
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcct 111  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||| |||||||||  | || |||| |||||||||||    
T  48606567 ttttatttcaatttatgactatttatatattatgttacatgtgaatttgcggtcaaaattttgctcagactctataaaattcct 48606484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 14499117 - 14499206
Alignment:
Q  28 ttttatttcaatttataactattta-tatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctc 116  Q
    ||||||| |||||||  |||||||| |||||||||||||||||||||||||||||||| |||  || |  ||||||||||||||||||||    
T  14499117 ttttattacaatttaagactatttaatatattatgtcgcatgtgaatttgcgatcaaattttttcctaggctcgataaaattcctagctc 14499206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 25017594 - 25017666
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    ||||||| ||| ||||||||| |||||| ||||||||||||||||||| ||||| |||||||| |||||||||    
T  25017594 atgacaagcctcttttatttcgatttatgactatttatatattatgtcacatgtaaatttgcggtcaaaattt 25017666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 33490456 - 33490506
Alignment:
Q  27 attttatttcaatttataactatttatatattatgtcgcatgtgaatttgc 77  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  33490456 attttatttcgatttatgactatttatatattatgtcgcatgtgaatttgc 33490506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 40864662 - 40864578
Alignment:
Q  39 tttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    ||||| ||||||||||||||||||| ||||| |||||||| |||||||||   ||| || |||||||||||||  ||||||||||    
T  40864662 tttatgactatttatatattatgtcacatgtaaatttgcggtcaaaattttgtccagacacgataaaattcctgactccaccact 40864578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 49465454 - 49465378
Alignment:
Q  39 tttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagct 115  Q
    ||||| |||||||||||||||||||||||||||||||||| | |||| ||  ||||  ||||||||||||| |||||    
T  49465454 tttatgactatttatatattatgtcgcatgtgaatttgcggttaaaactttgcccaggctcgataaaattcttagct 49465378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 30055041 - 30055122
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattc 109  Q
    ||||||||  |||||| |||||||||||||||||||  ||||||||||||| |||||||||   ||| |||| |||||||||    
T  30055041 ttttattttgatttatgactatttatatattatgtcatatgtgaatttgcggtcaaaattttgtccagactctataaaattc 30055122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 42309994 - 42309899
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    |||| ||||||||||| ||| ||||||||||||||| ||||||||||| |||| ||  |||  ||||| ||| ||||| ||||| ||||| |||||    
T  42309994 ttttctttcaatttatgactgtttatatattatgtcacatgtgaatttacgattaattttttgcccaagctccataaatttcctggctccgccact 42309899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 32981098 - 32981048
Alignment:
Q  30 ttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||||| |||||| ||||||||||||||||||| ||||||||||| ||||    
T  32981098 ttatttcgatttatgactatttatatattatgtcacatgtgaatttacgat 32981048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 26272890 - 26272834
Alignment:
Q  22 aacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcg 78  Q
    ||||| ||||||||| |||||| ||||||||||||| ||||| ||||| ||||||||    
T  26272890 aaccttttttatttcgatttatgactatttatatatcatgtcacatgtaaatttgcg 26272834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 30558960 - 30558880
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaatt 108  Q
    ||||||||  |||||| ||||||||||||||||||| ||||||||||| |  ||||||| |  | ||||||| ||||||||    
T  30558960 ttttattttgatttatgactatttatatattatgtcacatgtgaatttacagtcaaaatcttgcgcaaactctataaaatt 30558880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 11843864 - 11843798
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttat--atattatgtcgcatgtgaatttgcgat 80  Q
    ||||| ||||| |||||||||||||||| |||||||||  |||||||||  |||| |||||||||||    
T  11843864 atgacgaaccttttttatttcaatttatgactatttatatatattatgttacatgcgaatttgcgat 11843798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 320762 - 320712
Alignment:
Q  30 ttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||||| |||||| |||  |||||||||||||| ||||||||||||||||    
T  320762 ttatttcgatttatgactgattatatattatgtcacatgtgaatttgcgat 320712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 41971350 - 41971292
Alignment:
Q  22 aacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||| ||||||||  | |||| ||| ||||||||||||||| ||||||||||||||||    
T  41971350 aacctcttttattttgagttatgactgtttatatattatgtcacatgtgaatttgcgat 41971292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 170415 - 170355
Alignment:
Q  22 aacctattttatttcaatttataactatttat--atattatgtcgcatgtgaatttgcgat 80  Q
    ||||| ||||||||| |||||| |||||||||  |||||||||| ||||| ||||||||||    
T  170415 aacctcttttatttcgatttatgactatttatatatattatgtcacatgtaaatttgcgat 170355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 15209383 - 15209329
Alignment:
Q  22 aacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcg 78  Q
    ||||| ||||||||| |||||| |||  |||||||||||||| ||||||||||||||    
T  15209383 aacctcttttatttcgatttatgact--ttatatattatgtcacatgtgaatttgcg 15209329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 9637344 - 9637404
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    ||||||||| |||||| | ||||||||||||||||| ||| |||||||  | |||||||||    
T  9637344 ttttatttcgatttattattatttatatattatgtcacatatgaatttagggtcaaaattt 9637404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 32379812 - 32379756
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaa 84  Q
    ||||||||| |||||| | ||||||||||  ||||| |||||||||||||| |||||    
T  32379812 ttttatttcgatttatgattatttatataacatgtcacatgtgaatttgcgttcaaa 32379756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 3055702 - 3055791
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctcc 117  Q
    ||||||||| |||||| |||||||||||||||| | |||||||||||||||||||||||||   |||| |||||||||||||||||||||    
T  3055702 ttttatttcgatttatgactatttatatattatatagcatgtgaatttgcgatcaaaattttgtccaagctcgataaaattcctagctcc 3055791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 22712854 - 22712760
Alignment:
Q  29 tttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    ||||||||||||||| ||||||||||||| ||||| ||||| || ||||| |||||||||   |||||||||||||||||||||||||| |||||    
T  22712854 tttatttcaatttatgactatttatatatcatgtcacatgtaaacttgcggtcaaaattttgtccaaactcgataaaattcctagctccgccact 22712760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 28801947 - 28802005
Alignment:
Q  22 aacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  28801947 aacctcttttatttcaatttatgactgtttatatattatgtcgcatgtgaatttgcgat 28802005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 1280801 - 1280861
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||||||| | |||||||    
T  1280801 ttttatttcgatttatgactatttatatattatgtcacatgtgaatttgcggttaaaattt 1280861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 23244525 - 23244473
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  23244525 ttttatttcaatttatggctatttatatattatgtcgcatgtaaatttgcgat 23244473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 8785990 - 8786079
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaatt 108  Q
    ||||||||||| |||||||| |||||||    | |||||||||||||| |||||||||||||| | |||||||  ||||||||| ||||||||    
T  8785990 atgacaaacctcttttattttaatttat---gaattatatattatgtcccatgtgaatttgcggttaaaattttgcccaaactcaataaaatt 8786079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 27168756 - 27168698
Alignment:
Q  30 ttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    ||||||| |||||| |||||||||||||||||||  |||||||||||| ||||||||||    
T  27168756 ttatttcgatttatgactatttatatattatgtcaaatgtgaatttgcaatcaaaattt 27168698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 192849 - 192938
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctcc 117  Q
    ||||||||  |||||| | | ||||||||||||||  |||||||||||||||| ||  ||| ||||||| || |||||||||||| ||||    
T  192849 ttttattttgatttatgattgtttatatattatgttacatgtgaatttgcgataaattttttacccaaattctataaaattcctaactcc 192938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 15730911 - 15730868
Alignment:
Q  45 actatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    ||||||||||||||||||| |||||||||||||  |||||||||    
T  15730911 actatttatatattatgtcacatgtgaatttgcattcaaaattt 15730868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 13819086 - 13819135
Alignment:
Q  31 tatttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    |||||| |||||| ||| ||||||||||||||| ||||||||||| ||||    
T  13819086 tatttcgatttatgactgtttatatattatgtcacatgtgaatttacgat 13819135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 1775423 - 1775375
Alignment:
Q  32 atttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||| |||||| ||| ||||||||||||||| ||||||||||| ||||    
T  1775423 atttcgatttatgactgtttatatattatgtcacatgtgaatttacgat 1775375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 50091475 - 50091576
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagct 115  Q
    ||||| ||||| ||||||||  |||||| |||||||||||||||||||||| ||||||||||||| |||| ||  | || ||||||||||||||||||||    
T  50091475 atgacgaacctcttttattttgatttatgactatttatatattatgtcgcaagtgaatttgcgataaaaagtttgctcagactcgataaaattcctagct 50091574  T
Q  116 cc 117  Q
    ||    
T  50091575 cc 50091576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 3856834 - 3856727
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagct 115  Q
    ||||| |||||| |||||||  |||||||||||||||||||||||||| |||||||||||||| | ||||||| |  ||  |||||||||||| || |||    
T  3856834 atgacgaacctactttattttgatttataactatttatatattatgtcacatgtgaatttgcggtgaaaattttattcaggctcgataaaatttctggct 3856735  T
Q  116 ccaccact 123  Q
    || |||||    
T  3856734 ccgccact 3856727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 43137334 - 43137406
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    ||||||||||| ||||||||| |||||| |||||| |||||||||||| |||||||||||||| | |||||||    
T  43137334 atgacaaacctcttttatttcgatttatgactattcatatattatgtcacatgtgaatttgcggttaaaattt 43137406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 24988768 - 24988673
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    ||||||||  |||||| | |||||||| |||||||| |||||||||||| | ||||||||| ||||| |||| |||||||| ||  ||||||||||    
T  24988768 ttttattttgatttatgattatttataaattatgtcacatgtgaatttgtggtcaaaattttacccacactctataaaatttctgactccaccact 24988673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 42269205 - 42269133
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||| ||| | ||||| || | |||||||    
T  42269205 atgacaaatctcttttatttcaatttataattatttatatattatgtcacatataaatttacggttaaaattt 42269133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 9743486 - 9743577
Alignment:
Q  26 tattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctcc 117  Q
    ||||| ||||| |||||| ||||||||||||  ||||  |||||||||||||| |||||||||  |||| |||  ||||||||||| |||||    
T  9743486 tatttgatttcgatttatgactatttatatacaatgtaacatgtgaatttgcggtcaaaattttgcccagactatataaaattcctggctcc 9743577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 17073947 - 17073852
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    ||||||||| |||| | ||||||||||||||||||| ||| |||||||||  |||||||||  ||||  ||| |||||||| |  |||||||||||    
T  17073947 ttttatttcgatttttgactatttatatattatgtcacatatgaatttgcagtcaaaatttggcccatgctctataaaatttcaggctccaccact 17073852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 37381835 - 37381763
Alignment:
Q  17 tgacaaacctattttatttcaatttat-aactatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    |||| ||||| ||||||||| |||||| ||||||||||||||||| || ||||||||||| || | |||||||    
T  37381835 tgacgaacctcttttatttcgatttatgaactatttatatattatatcacatgtgaattttcggttaaaattt 37381763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 5136364 - 5136419
Alignment:
Q  22 aacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgc 77  Q
    ||||| |||||||| ||||||| ||| ||||||||||| ||| |||||||||||||    
T  5136364 aacctcttttattttaatttatgactgtttatatattacgtcacatgtgaatttgc 5136419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 34083161 - 34083076
Alignment:
Q  38 atttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    |||||| ||| ||||||||||||||| ||||||||||| |||| ||  |||  |||  |||| ||||| ||||||||||| |||||    
T  34083161 atttatgactgtttatatattatgtcacatgtgaatttacgattaatttttttcccggactccataaatttcctagctccgccact 34083076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 15668182 - 15668259
Alignment:
Q  45 actatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccactt 124  Q
    ||||||||||||||||||| ||||||||||| || | |||||||  ||||| |||  ||||||| || ||||| ||||||    
T  15668182 actatttatatattatgtcacatgtgaatttacggtgaaaatttcgcccaatctc--taaaatttctggctccgccactt 15668259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 42964833 - 42964773
Alignment:
Q  48 atttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaatt 108  Q
    |||||||||||||||| ||||||||||| || | ||||||| ||| ||| || ||||||||    
T  42964833 atttatatattatgtcacatgtgaatttacggttaaaatttgacctaaattctataaaatt 42964773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 51262210 - 51262278
Alignment:
Q  40 ttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaatt 108  Q
    |||||| ||||||||||||||||| ||||||||||  || | ||||||| ||| | |||| ||||||||    
T  51262210 ttataattatttatatattatgtcacatgtgaattcacggttaaaattttacctatactctataaaatt 51262278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 31393003 - 31393104
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagct 115  Q
    ||||| ||||| ||||| ||| |||||| ||||||||||||||||||| ||||| ||||| || ||||||||| ||||| ||||||| ||||||||||||    
T  31393003 atgacgaacctcttttaattcgatttatgactatttatatattatgtcacatgtaaatttacggtcaaaattttacccagactcgatgaaattcctagct 31393102  T
Q  116 cc 117  Q
    ||    
T  31393103 cc 31393104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 111
Target Start/End: Original strand, 30547162 - 30547228
Alignment:
Q  45 actatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcct 111  Q
    ||||||||| |||||| || |||||||||||||| ||||||||| |||||||||| |||||||||||    
T  30547162 actatttatgtattatatcacatgtgaatttgcggtcaaaattttacccaaactcaataaaattcct 30547228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 12539793 - 12539882
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctcc 117  Q
    ||||||||| ||| || ||||||||||||||||||| ||| | ||||| || ||||||||| ||| ||| || |||||||||||||||||    
T  12539793 ttttatttcgattcatgactatttatatattatgtcacatataaatttacggtcaaaattttacctaaattcaataaaattcctagctcc 12539882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 26238687 - 26238744
Alignment:
Q  22 aacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcga 79  Q
    ||||| ||||||||| |||||| ||| |||||||||||||||||||||||||||||||    
T  26238687 aacctcttttatttcgatttatgactgtttatatattatgtcgcatgtgaatttgcga 26238744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 27925697 - 27925640
Alignment:
Q  31 tatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||    
T  27925697 tatttcaatctataactatttatatatcatgtcacatgtgaatttgcggtcaaaattt 27925640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 4554393 - 4554295
Alignment:
Q  26 tattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccactt 124  Q
    ||||||||||| |||||| ||||||||||||||||||| ||| | ||||| |||| ||  |||  |||| |||| ||||| ||||||||||| ||||||    
T  4554393 tattttatttcgatttatgactatttatatattatgtcacatctaaatttacgataaattttttgcccagactccataaatttcctagctccgccactt 4554295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 19951786 - 19951727
Alignment:
Q  29 tttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    |||||||| |||||| ||||||||||||||||||  |||||||||||||| | |||||||    
T  19951786 tttatttcgatttatgactatttatatattatgttacatgtgaatttgcggttaaaattt 19951727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 18982653 - 18982699
Alignment:
Q  34 ttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    |||||||||| ||| ||||||||||||||||||||||||||| ||||    
T  18982653 ttcaatttatgactgtttatatattatgtcgcatgtgaatttacgat 18982699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 35649607 - 35649541
Alignment:
Q  51 tatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctcc 117  Q
    ||||||||||||| |||||||||||||||| ||| |||  ||||||||| |||||||| || |||||    
T  35649607 tatatattatgtcacatgtgaatttgcgattaaatttttgcccaaactctataaaatttctggctcc 35649541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 45122216 - 45122266
Alignment:
Q  30 ttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    |||||||||||||| ||| |||||||||||| || ||||||||||||||||    
T  45122216 ttatttcaatttatgactgtttatatattatatcacatgtgaatttgcgat 45122266  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 45261799 - 45261740
Alignment:
Q  29 tttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    |||||||  |||||| |||||||||||||||| || |||||||||||||| | |||||||    
T  45261799 tttatttagatttatgactatttatatattatatcacatgtgaatttgcggttaaaattt 45261740  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 18425917 - 18425857
Alignment:
Q  22 aacctattttatttcaatttataactatttatatat--tatgtcgcatgtgaatttgcgat 80  Q
    ||||| ||||||||| |||| | |||||||||||||  |||||| ||||||||||||||||    
T  18425917 aacctcttttatttcgatttctgactatttatatatattatgtcacatgtgaatttgcgat 18425857  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 9230619 - 9230714
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    ||||||||  |||||| ||||||||||||||||||| ||||||||||||| ||||||||||  ||||  || ||||||||| |||||||| |||||    
T  9230619 ttttattttgatttatgactatttatatattatgtcacatgtgaatttgcaatcaaaattttgcccaggcttgataaaatttctagctccgccact 9230714  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 25491592 - 25491510
Alignment:
Q  25 ctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaat 107  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| | |||||||  |||| |||| |||||||    
T  25491592 ctattttatttcaatttatgactatttatatattatgtcacatgtaaatttgcggttaaaattttgcccagactctataaaat 25491510  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 45 - 115
Target Start/End: Complemental strand, 26782249 - 26782179
Alignment:
Q  45 actatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagct 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||  |||| |||| ||||||||| |||||    
T  26782249 actatttatatattatgtcgcatgtgaatttgagatcaaaattttgcccagactcaataaaattcttagct 26782179  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 9557896 - 9557988
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaatt 108  Q
    ||||| ||||| ||||||||  |||||| || |||||||||||||||| ||||| |||||||| |||||||||  | || |||||||||||||    
T  9557896 atgacgaaccttttttattttgatttatgacaatttatatattatgtcacatgtaaatttgcggtcaaaattttgctcagactcgataaaatt 9557988  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 18375628 - 18375717
Alignment:
Q  33 tttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    |||| |||||| ||||||||||||||||||| |||||| ||||||  ||||||||| ||||| |||| | ||||||||| ||||| |||||    
T  18375628 tttcgatttatgactatttatatattatgtcacatgtg-atttgctgtcaaaattttacccatactctacaaaattcctggctccgccact 18375717  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 25024742 - 25024840
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccacttat 126  Q
    ||||||||  |||||| | |||||||||||||||||  ||||||||||||| | |||||||  | || |||| ||||||||||| ||||| ||||||||    
T  25024742 ttttattttgatttatgattatttatatattatgtcatatgtgaatttgcggttaaaattttgctcagactctataaaattcctggctccgccacttat 25024840  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 47729943 - 47730023
Alignment:
Q  28 ttttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaatt 108  Q
    ||||||||| |||||| | ||||||||||||||||| ||| ||||||| || |||||||||  | ||||||| ||||||||    
T  47729943 ttttatttcgatttatgattatttatatattatgtcacatttgaatttacggtcaaaattttgcacaaactctataaaatt 47730023  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 34468435 - 34468376
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaattt 75  Q
    |||| |||||| |||||||||||||||| ||| |||||||||||| || |||||||||||    
T  34468435 atgataaacctcttttatttcaatttatgactgtttatatattatatcacatgtgaattt 34468376  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 40703005 - 40703077
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaattt 88  Q
    |||||||  |||||||||||  |||||| |||||||||||||| || | |||||||||||| | |||||||||    
T  40703005 atgacaagtctattttattttgatttatgactatttatatattgtggcacatgtgaatttgaggtcaaaattt 40703077  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 11019670 - 11019616
Alignment:
Q  22 aacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttg 76  Q
    ||||| ||||||||  |||||| ||| ||||||||||||||| ||||||||||||    
T  11019670 aacctcttttattttgatttatgactgtttatatattatgtcacatgtgaatttg 11019616  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 23179833 - 23179746
Alignment:
Q  34 ttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    ||||||||||||||||||||||||  ||||  |||||||||| | |||||||||| |  || | ||||||||||| || ||||| |||||    
T  23179833 ttcaatttataactatttatatat--tgtcatatgtgaatttacaatcaaaattttattcatattcgataaaatttctggctccgccact 23179746  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 8395287 - 8395335
Alignment:
Q  32 atttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||| |||||| ||| ||||||||||||||| ||||||||||| ||||    
T  8395287 atttcgatttatgactgtttatatattatgtcacatgtgaatttacgat 8395335  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 36631938 - 36631986
Alignment:
Q  32 atttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    ||||| |||||| ||| ||||||||||||||| ||||||||||| ||||    
T  36631938 atttcgatttatgactgtttatatattatgtcacatgtgaatttacgat 36631986  T

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Target: scaffold0198 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 1614 - 1711
Alignment:
Q  26 tattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    ||||||||||| |||||| |||||||||||||||||| | ||| ||||||||| |||||||||  || ||  || ||||||||||| ||||| |||||    
T  1614 tattttatttcgatttatgactatttatatattatgttgtatgcgaatttgcggtcaaaattttgccaaagttcaataaaattcctggctccgccact 1711  T

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Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 214122 - 214019
Alignment:
Q  22 aacctattttatttcaatttataactatttatatat--tatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccac 119  Q
    ||||| ||||||||| |||||| |||||||||||||  |||||| ||| |||||||||||| ||  |||  ||||| ||| ||||||||||||||||| |    
T  214122 aacctcttttatttcgatttatgactatttatatatattatgtcacatatgaatttgcgataaactttttgcccaagctctataaaattcctagctccgc 214023  T
Q  120 cact 123  Q
    ||||    
T  214022 cact 214019  T

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Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 435308 - 435256
Alignment:
Q  24 cctattttatttcaatttataactatttatatattatgtcgcatgtgaatttg 76  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||    
T  435308 cctatttaatttcgatttataactatttatatattatgtcacatgtgaatttg 435256  T

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Target: scaffold0178 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 17958 - 18040
Alignment:
Q  26 tattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaatt 108  Q
    ||||||||||  |||||| |||||||||||||||   | ||||||||||||||||||||||||  |||| | |||||||||||    
T  17958 tattttattttgatttatgactatttatatattacaccacatgtgaatttgcgatcaaaattttgcccagattcgataaaatt 18040  T

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Target: scaffold0726 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 1122 - 1198
Alignment:
Q  47 tatttatatattatgtcgcatgtgaatttgcgatcaaaatttaacccaaactcgataaaattcctagctccaccact 123  Q
    |||||||| |||||||| |||||||||||| | ||||||||| ||||| |||| ||| |||| ||  ||||||||||    
T  1122 tatttataaattatgtcacatgtgaatttgtggtcaaaattttacccacactctatataatttctgactccaccact 1198  T

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Target: scaffold0154 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 32281 - 32345
Alignment:
Q  16 atgacaaacctattttatttcaatttataactatttatatattatgtcgcatgtgaatttgcgat 80  Q
    |||| |||||| ||||||||| |||||| | | |||||||||||||||  | |||||||||||||    
T  32281 atgataaaccttttttatttcgatttatgattgtttatatattatgtcataagtgaatttgcgat 32345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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