View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5828_high_4 (Length: 299)
Name: NF5828_high_4
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5828_high_4 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
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| [»] scaffold1079 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 16898935 - 16899230
Alignment:
| Q |
1 |
caaaggtagggcatttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898935 |
caaaggtagggcatttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctca |
16899034 |
T |
|
| Q |
101 |
ccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16899035 |
ccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaat |
16899134 |
T |
|
| Q |
201 |
caattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtccat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
16899135 |
caattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgctgtccat |
16899230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 18347450 - 18347745
Alignment:
| Q |
1 |
caaaggtagggcatttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18347450 |
caaaggtagggcatttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctca |
18347549 |
T |
|
| Q |
101 |
ccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18347550 |
ccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaat |
18347649 |
T |
|
| Q |
201 |
caattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtccat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
18347650 |
caattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgctgtccat |
18347745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 51701101 - 51701232
Alignment:
| Q |
120 |
gacaaatgtgtgcatttctattagggtcgtat----tcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtata |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| |||||||| || |||||||||||||| ||||||| |||||||||||||||| ||||| |
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|
| T |
51701101 |
gacaaatgtgtgcatttcaattagggtcgtatatattcgttagttacgttttgaccatatatgtctatttcattcttacgaaaatcaattttacagtata |
51701200 |
T |
|
| Q |
216 |
gacgcttatgacct-ccccctctatgccctgc |
246 |
Q |
| |
|
||| ||||||| || ||||||||||||||||| |
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|
| T |
51701201 |
gacacttatgatctcccccctctatgccctgc |
51701232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Original strand, 51701385 - 51701430
Alignment:
| Q |
240 |
gccctgcggtaatgattcctctggcattacggcctttaccacaatg |
285 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
51701385 |
gccctgcggtaaagattcctctggcattacggcctttaacacaatg |
51701430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 13237041 - 13236746
Alignment:
| Q |
1 |
caaaggtagggcatttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13237041 |
caaaggtagggcatttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctca |
13236942 |
T |
|
| Q |
101 |
ccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13236941 |
ccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaat |
13236842 |
T |
|
| Q |
201 |
caattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtccat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
13236841 |
caattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgctgtccat |
13236746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 198559 - 198277
Alignment:
| Q |
1 |
caaaggtagggcatttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctca |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
198559 |
caaaggtagggcatttcccattgatataggaacttttgtaccagaaacaatagtatctccaattatagcccctctgggatgtaaaatatatctcttctca |
198460 |
T |
|
| Q |
101 |
ccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||| |||| |||||||||||| ||| |||||||||| |
|
|
| T |
198459 |
ccatccccatagtgtatgagacaaatgtatgcatttcgattagggtcgtattctatggttacgattctaccagatatgtctttttgattccgtcgaaaat |
198360 |
T |
|
| Q |
201 |
caattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaa |
283 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
198359 |
ctattttacggtataggcgcttatgacctccccctctatgccatgcggtaatgattcctctggaattacgacctttaccacaa |
198277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 33420415 - 33420594
Alignment:
| Q |
1 |
caaaggtagggcatttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33420415 |
caaaggtagggcatttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccctctggggtgtaaaatatatcttttctca |
33420514 |
T |
|
| Q |
101 |
ccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtc |
180 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33420515 |
ccatccccatagtgtatgagataaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtc |
33420594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 95 - 296
Target Start/End: Original strand, 1 - 202
Alignment:
| Q |
95 |
ttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
1 |
ttctcaccatccccatagtgtatgagacaaatgtatgcatttcgattagggtcgtattctatggttacgattctaccatatatgtctttttcatttcgtc |
100 |
T |
|
| Q |
195 |
gaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtcc |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
101 |
gaaaatcaattttacggtatagacgcttatgacctccccctctatgccttgcggtaatgattcctctggcattacgacctttaccacaacgatgctgtcc |
200 |
T |
|
| Q |
295 |
at |
296 |
Q |
| |
|
|| |
|
|
| T |
201 |
at |
202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 163 - 296
Target Start/End: Complemental strand, 23053585 - 23053452
Alignment:
| Q |
163 |
gattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctg |
262 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
23053585 |
gattcgactatatatgtctttttcattccgtagaaaatcaattttacggtatagacgcttatgacctctccctctatgccctgtggtaacgattcctctg |
23053486 |
T |
|
| Q |
263 |
gcattacggcctttaccacaatgatgatgtccat |
296 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
23053485 |
gcattacagcctttaccacagtgatgctgtccat |
23053452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33064708 - 33064637
Alignment:
| Q |
1 |
caaaggtagggcatttcccatttttataggaacttctgtaccataaacaatggtatctccaattatagcccct |
73 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33064708 |
caaaggtagggcatttcccatttt-ataggaacttttgtaccataaacaatggtatctccaattatagcccct |
33064637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 26345889 - 26345819
Alignment:
| Q |
129 |
gtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaa |
199 |
Q |
| |
|
||||||||| |||||||| || ||| |||||||||||| | ||||||||||||||| ||| ||||||||| |
|
|
| T |
26345889 |
gtgcatttcgattagggttgttttcactagttacgattcaatcatatatgtcttttttattccgtcgaaaa |
26345819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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