View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5828_low_3 (Length: 360)
Name: NF5828_low_3
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5828_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 124 - 338
Target Start/End: Complemental strand, 47250455 - 47250240
Alignment:
| Q |
124 |
aatcctcacccattcccaaaccctaattttcatcactttctcctattctttcagagcaacacacttcactacactct-gtaagatggagactcgtgcctc |
222 |
Q |
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| T |
47250455 |
aatcctcacccattcccaaaccctaattttcatcactttctccttttctttcagagcaacacacttcactacactcttgaaagatggagactcgtgcctc |
47250356 |
T |
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| Q |
223 |
aaagaagagagccaacaccattcaacaaccaccacaagtcatggttcccaaaagacagagagttgttttaggtgaattttccgatctcaatcttcctgat |
322 |
Q |
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| T |
47250355 |
aaagaagagagccaacaccattcaacaaccaccacaagtcatggttcccaaaagacagagagttgttttaggtgaattttccgatctcaatcttcctgat |
47250256 |
T |
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| Q |
323 |
tttgattatcaaccta |
338 |
Q |
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|||||||||||||||| |
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| T |
47250255 |
tttgattatcaaccta |
47250240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 184 - 338
Target Start/End: Complemental strand, 47243404 - 47243250
Alignment:
| Q |
184 |
acacttcactacactctgtaagatggagactcgtgcctcaaagaagagagccaacaccattcaacaaccaccacaagtcatggttcccaaaagacagaga |
283 |
Q |
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|||||||||||||||||| |||||||||||||| || |||||||| ||||||||||||| ||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
47243404 |
acacttcactacactctgaaagatggagactcgcgcatcaaagaaaagagccaacaccaatcaacaacctccacatgtcatcgttcccaaaagacagagg |
47243305 |
T |
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| Q |
284 |
gttgttttaggtgaattttccgatctcaatcttcctgattttgattatcaaccta |
338 |
Q |
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|||||||| ||||||||| | |||||||||||||||||||||||||| ||||||| |
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| T |
47243304 |
gttgttttgggtgaatttccagatctcaatcttcctgattttgattaccaaccta |
47243250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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