View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5828_low_4 (Length: 301)
Name: NF5828_low_4
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5828_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 2 - 301
Target Start/End: Original strand, 21078307 - 21078606
Alignment:
| Q |
2 |
atgataaggtttttccttccaacatgagatcgcaccgcgaaaagggtattgagtctccaaccacatccttcttccctgtctccttcttggagcaacagag |
101 |
Q |
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| T |
21078307 |
atgataaggtttttccgtccaacatgagatcgcactgcgaaaagggtattgagtctccgaccacatccttcttccctgtctccttcttggagcaacagag |
21078406 |
T |
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| Q |
102 |
tgatatgtgtgatcttgatcagtttcaagtggatgatgcaccaccagttattaacttatccaaatattttcctccaagttcccataaaaagaaaaagcgc |
201 |
Q |
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| T |
21078407 |
tgatatgtgtgatcttgatcagtttcaagtggatgatgcaccaccagttattaacttatccaaatatttgcctccaagttcccataaaaagaaaaaacgc |
21078506 |
T |
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| Q |
202 |
agcatcgtgagaagaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtctcgtggtggtggtggtgatgatgacgatgatg |
301 |
Q |
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| T |
21078507 |
agcatcgtgagaagaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtctcgtggtggtggtggtgatgatgacgatgatg |
21078606 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 3073780 - 3073724
Alignment:
| Q |
214 |
agaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtct |
270 |
Q |
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| T |
3073780 |
agaaatatcattgatcatgaacatcttaatggagcatatacactcttcgatatgtct |
3073724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 27732144 - 27732088
Alignment:
| Q |
214 |
agaaatatgattgatcatgaacttcttaatgcagcacatatactcttggatatgtct |
270 |
Q |
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| T |
27732144 |
agaaatatcattgatcatgaacatcttaatggagcacaaacactcttcaatatgtct |
27732088 |
T |
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