View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5828_low_6 (Length: 253)
Name: NF5828_low_6
Description: NF5828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5828_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 28909651 - 28909406
Alignment:
| Q |
1 |
tttttctaggatcctgccaagaaagagctcggtgagcagtttctatcccatgttgatacattcaccagagactttttcaattcattaaaagaggataccg |
100 |
Q |
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| T |
28909651 |
tttttctaggatcctgccaagaaagagctcggtgagtagttgctatcccatgttgatacattcaccagagactttttcaattcattaaaagaggataccg |
28909552 |
T |
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| Q |
101 |
tgcatcaatccggtatgatgtttatgcttatagatggaggagagtatctccttttttcaattataaaatagaccttaaaattagttattttgaatcaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28909551 |
tgcatcaatccggtatgatgtttatgcttataaatggaggagagtatctccttttttcaattataaaatagaccttaaaattagttattttgaatcaggt |
28909452 |
T |
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| Q |
201 |
cctgctattgaattcttggagaatgctcttggaaaatttgatgatg |
246 |
Q |
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| T |
28909451 |
cctgctattgaattcttggagaatgctcttggaaaatttgatgatg |
28909406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 28922220 - 28921972
Alignment:
| Q |
1 |
tttttctaggatcctgccaagaaagagctcggtgagcagtttctatcccatgttgatacattcaccagagactttttcaattcattaaaagaggataccg |
100 |
Q |
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| T |
28922220 |
tttttgtaggatcctgccaagaaagagtttgctgagcagttgttatcacatgttgataccttcaccaaggaactgtttgtttcactaaaaggggatactg |
28922121 |
T |
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| Q |
101 |
tgcatcaatccggtatgatgtttatgcttatagatggaggagag---tatctccttttttcaattataaaatagaccttaaaattagttattttgaatca |
197 |
Q |
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| T |
28922120 |
tgcaacaatccagtaagatgattaagtctataagtggatgaaagatttattttcttctttcaaatgtaaaatagacctttaaattggttattctgaatca |
28922021 |
T |
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| Q |
198 |
ggtcctgctattgaattcttggagaatgctcttggaaaatttgatgatg |
246 |
Q |
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|||||| || ||||||||||||||||||||||||| ||||||||||||| |
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| T |
28922020 |
ggtcctacttttgaattcttggagaatgctcttggtaaatttgatgatg |
28921972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 28914134 - 28914052
Alignment:
| Q |
162 |
tataaaatagaccttaaaattagttattttgaatcaggtcctgctattgaattcttggagaatgctcttggaaaatttgatga |
244 |
Q |
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| T |
28914134 |
tataaaatagatttttaaaatggttattttgaatcaggtcctgcttctgatttcttggagaatgctcttggtaaatttgatga |
28914052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 28914599 - 28914544
Alignment:
| Q |
11 |
atcctgccaagaaagagctcggtgagcagtttctatcccatgttgatacattcacc |
66 |
Q |
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| T |
28914599 |
atcctgccaagaaagagttcggtgagcagttgttatcccatgttgatacattcacc |
28914544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 40288550 - 40288497
Alignment:
| Q |
193 |
aatcaggtcctgctattgaattcttggagaatgctcttggaaaatttgatgatg |
246 |
Q |
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| T |
40288550 |
aatcaggtcctgcctttgattacttggagaatgctcttggtaaatttgatgatg |
40288497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 40288736 - 40288672
Alignment:
| Q |
8 |
aggatcctgccaagaaagagctcggtgagcagtttctatcccatgttgatacattcaccagagac |
72 |
Q |
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| T |
40288736 |
aggatcctgcaaagaaagagtttggtgatcagttgatttctcatgttgatacattcaccaaagac |
40288672 |
T |
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