View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5829-Insertion-1 (Length: 600)

Name: NF5829-Insertion-1
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5829-Insertion-1
NF5829-Insertion-1
[»] chr6 (5 HSPs)
chr6 (63-383)||(24797475-24797798)
chr6 (397-557)||(24797256-24797417)
chr6 (335-388)||(9975048-9975101)
chr6 (342-384)||(29408064-29408106)
chr6 (335-392)||(10345990-10346047)
[»] chr7 (9 HSPs)
chr7 (335-392)||(26402778-26402835)
chr7 (335-384)||(17883309-17883358)
chr7 (335-392)||(41514287-41514344)
chr7 (335-389)||(5248629-5248683)
chr7 (335-384)||(47405226-47405275)
chr7 (335-389)||(26804015-26804069)
chr7 (349-395)||(2347467-2347513)
chr7 (478-544)||(34397407-34397473)
chr7 (343-392)||(33899740-33899789)
[»] chr8 (8 HSPs)
chr8 (335-396)||(38236253-38236314)
chr8 (336-389)||(44254124-44254177)
chr8 (335-389)||(33650064-33650118)
chr8 (336-389)||(34336470-34336523)
chr8 (341-389)||(15271074-15271122)
chr8 (341-392)||(9774800-9774851)
chr8 (335-389)||(42704361-42704415)
chr8 (343-395)||(44960513-44960565)
[»] chr1 (11 HSPs)
chr1 (335-389)||(45925549-45925603)
chr1 (335-392)||(44958303-44958360)
chr1 (337-389)||(43492126-43492178)
chr1 (335-392)||(3483093-3483150)
chr1 (335-392)||(25670767-25670824)
chr1 (335-389)||(698822-698876)
chr1 (335-379)||(49003715-49003759)
chr1 (335-389)||(28188678-28188731)
chr1 (335-384)||(31822449-31822498)
chr1 (478-538)||(3996563-3996623)
chr1 (345-389)||(30494114-30494158)
[»] chr5 (11 HSPs)
chr5 (335-389)||(591220-591274)
chr5 (335-389)||(23129398-23129452)
chr5 (335-389)||(27146928-27146982)
chr5 (336-392)||(39046988-39047044)
chr5 (335-389)||(40872296-40872350)
chr5 (335-392)||(42265489-42265546)
chr5 (335-389)||(40458994-40459048)
chr5 (390-427)||(14328408-14328445)
chr5 (335-389)||(41520721-41520775)
chr5 (352-389)||(8415746-8415783)
chr5 (465-546)||(14688748-14688829)
[»] chr4 (15 HSPs)
chr4 (335-392)||(20180219-20180276)
chr4 (335-392)||(54495534-54495591)
chr4 (339-389)||(46088516-46088566)
chr4 (335-392)||(20787446-20787503)
chr4 (335-391)||(10042900-10042956)
chr4 (335-383)||(21988458-21988506)
chr4 (336-379)||(28695832-28695875)
chr4 (335-389)||(5047260-5047314)
chr4 (335-389)||(24753984-24754038)
chr4 (335-392)||(5091839-5091895)
chr4 (335-384)||(46521565-46521614)
chr4 (478-546)||(21240162-21240230)
chr4 (341-389)||(30161349-30161397)
chr4 (352-392)||(34124531-34124571)
chr4 (498-546)||(52820595-52820643)
[»] chr2 (3 HSPs)
chr2 (335-392)||(18375115-18375172)
chr2 (335-389)||(27501731-27501785)
chr2 (335-388)||(63942-63992)
[»] chr3 (6 HSPs)
chr3 (336-392)||(11465622-11465678)
chr3 (335-389)||(4275203-4275257)
chr3 (336-378)||(32734748-32734790)
chr3 (335-389)||(53605710-53605764)
chr3 (335-384)||(53641670-53641719)
chr3 (336-384)||(30364049-30364097)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 63 - 383
Target Start/End: Complemental strand, 24797798 - 24797475
Alignment:
Q  63 ttatctctaaatatgtcattttccaagttgcaaggtatatttatttaacaacatacatttttcaattccttgtgtcattcatactggattgaatttatgt 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24797798 ttatctctaaatatgtcattttccaagttgcaaggtatatttatttaaccacatgcatttttcaattccttgtgtcattcatactggattgaatttatgt 24797699  T
Q  163 gcagtcgaaaaatgatgttgtcatgcaatcagtaggttcgagatcgtctgatcaacaattcatatttcaacc--nnnnnnnnnattaaggaaattcatat 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |            ||||||||||||||||    
T  24797698 gcagtcgaaaaatgatgttgtcatgcaatcagtaggttcgagatcgtctgatcaacaattcatatttcaaacttttttttttttttaaggaaattcatat 24797599  T
Q  261 ttcaaccttaaaggctcacaaaaaatgctaacaagaaccctaactataattagtga-aagcgaaatattaacaaagtttagtaactttaaatagtaaatt 359  Q
    ||||||||||||||||||||||||||||||||||||||| |||  | || || | | ||| |   |    |||  |||||||||||||||||||||| ||    
T  24797598 ttcaaccttaaaggctcacaaaaaatgctaacaagaaccttaaagagaaatattaacaagtgcccttaggacattgtttagtaactttaaatagtaagtt 24797499  T
Q  360 tttgtcaaaatttatgaaatcaat 383  Q
    ||||||||| ||||||||||||||    
T  24797498 tttgtcaaagtttatgaaatcaat 24797475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 397 - 557
Target Start/End: Complemental strand, 24797417 - 24797256
Alignment:
Q  397 ttaaagaatgcccttaaagcactcattaacaaaacc-ttagtaaaaatatccaaagtaaaaatttgatgttagaaataatacattcaacacattcaaatt 495  Q
    ||||||| |||||||| |||   | ||||||| ||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  24797417 ttaaagagtgcccttagagctaacgttaacaagaccgttagtaaaaatatccaaagtaaaaaatttatgttagaaataatacattcaacacattcaaatt 24797318  T
Q  496 ttaaaaaacaatttttagtacatgaaagttataaattgttttcttttttaatgcttagatcc 557  Q
    ||    || ||  |||| | ||||||||||||||||||||||||||||||||||||||||||    
T  24797317 ttttttaaaaaaatttacttcatgaaagttataaattgttttcttttttaatgcttagatcc 24797256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 388
Target Start/End: Original strand, 9975048 - 9975101
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtatt 388  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  9975048 gtttagtaactttaaatagtaaatttttgttaaagtttatgaaatcaatatatt 9975101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 342 - 384
Target Start/End: Complemental strand, 29408106 - 29408064
Alignment:
Q  342 aactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 384  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  29408106 aactttaaatagtaagtttttgtcaaaatttatgaaatcaatg 29408064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 10345990 - 10346047
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    |||||||||  |||| |||||||||||||| | |||||||| |||||||| |||||||    
T  10345990 gtttagtaatcttaattagtaaatttttgttagaatttatgtaatcaatgcattgaaa 10346047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 26402778 - 26402835
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26402778 gtttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgtattgaaa 26402835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 17883309 - 17883358
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 384  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17883309 gtttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatg 17883358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 41514287 - 41514344
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  41514287 gtttagtaactttaaatagtaagttttagtcaaagtttatgaaatcaatgtattgaaa 41514344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 5248629 - 5248683
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  5248629 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattg 5248683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 47405226 - 47405275
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 384  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  47405226 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatg 47405275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 26804015 - 26804069
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    ||||| |||||||||||||||| ||||||||||| ||||| ||||||||| ||||    
T  26804015 gtttaataactttaaatagtaagtttttgtcaaagtttataaaatcaatgcattg 26804069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 2347513 - 2347467
Alignment:
Q  349 aatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaattt 395  Q
    |||||||||||||| | |||||||||| |||||||| ||||||||||    
T  2347513 aatagtaaatttttattaaaatttatgtaatcaatgcattgaaattt 2347467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 544
Target Start/End: Original strand, 34397407 - 34397473
Alignment:
Q  478 attcaacacattcaaattttaaaaaacaatttttagtacatgaaagttataaattgttttctttttt 544  Q
    |||||||||||| |||||||||||||||||||||   |||| ||| ||||  |||||||| ||||||    
T  34397407 attcaacacattaaaattttaaaaaacaatttttttcacataaaatttatttattgttttatttttt 34397473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 33899740 - 33899789
Alignment:
Q  343 actttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    |||||||||| ||| ||||||| ||||||||||||||||||  |||||||    
T  33899740 actttaaatattaagtttttgttaaaatttatgaaatcaatacattgaaa 33899789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 396
Target Start/End: Original strand, 38236253 - 38236314
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaatttt 396  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  38236253 gtttaataactttaaatagtaaaattttgtcaaaatttatgaaatcaatgcattgaaatttt 38236314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 336 - 389
Target Start/End: Original strand, 44254124 - 44254177
Alignment:
Q  336 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  44254124 tttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcattg 44254177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 33650118 - 33650064
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  33650118 gtttagtaactttaaatagtaagtttttgtcaaaatgtatgaaatcaatgcattg 33650064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 389
Target Start/End: Original strand, 34336470 - 34336523
Alignment:
Q  336 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  34336470 tttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattg 34336523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 15271122 - 15271074
Alignment:
Q  341 taactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  15271122 taactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcattg 15271074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 392
Target Start/End: Complemental strand, 9774851 - 9774800
Alignment:
Q  341 taactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    ||||||||||||||||||||||||||||  |||||||||||||| |||||||    
T  9774851 taactttaaatagtaaatttttgtcaaagcttatgaaatcaatgcattgaaa 9774800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 42704415 - 42704361
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  42704415 gtttactaactttaaatagtaagtttttgtcaaaatttatgaaattaatgcattg 42704361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 44960565 - 44960513
Alignment:
Q  343 actttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaattt 395  Q
    ||||| |||||||||||||| | |||||||||| |||||||| ||||||||||    
T  44960565 acttttaatagtaaatttttatgaaaatttatgtaatcaatgcattgaaattt 44960513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 45925603 - 45925549
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  45925603 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgtattg 45925549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 44958303 - 44958360
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  44958303 gtttagtaactttaaatagtaaatttttgttaaagtttatgaaatcaatgcattgaaa 44958360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 43492126 - 43492178
Alignment:
Q  337 ttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  43492126 ttagtaactttaaatagtaaatttttgtcaaagtttatgaaatcaatgcattg 43492178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 3483150 - 3483093
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||    
T  3483150 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcgatgcattgaaa 3483093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 25670767 - 25670824
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    |||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||    
T  25670767 gtttagtaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattgaaa 25670824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 698822 - 698876
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||    
T  698822 gtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattg 698876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 49003759 - 49003715
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaat 379  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||    
T  49003759 gtttaataactttaaatagtaaatttttgtcaaagtttatgaaat 49003715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 28188731 - 28188678
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    ||||| |||||||||||||||| |||||||  |||||||||||||||||| ||||    
T  28188731 gtttaataactttaaatagtaagtttttgt-taaatttatgaaatcaatgcattg 28188678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 31822498 - 31822449
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 384  Q
    |||||||||||||| |||||||  |||||||||| ||||| |||||||||    
T  31822498 gtttagtaactttagatagtaagcttttgtcaaagtttataaaatcaatg 31822449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 3996623 - 3996563
Alignment:
Q  478 attcaacacattcaaattttaaaaaacaatttttagtacatgaaagttataaattgttttc 538  Q
    |||||||| ||| |||| | ||||||||||||||  |||||||||||||| |||| |||||    
T  3996623 attcaacatattgaaatatcaaaaaacaatttttcttacatgaaagttatcaattattttc 3996563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 30494158 - 30494114
Alignment:
Q  345 tttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||| ||||||| |||  |||||||||||||||||||    
T  30494158 tttaaatagtaagtttttgttaaagattatgaaatcaatgtattg 30494114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 591220 - 591274
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  591220 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattg 591274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 23129452 - 23129398
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  23129452 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattg 23129398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 27146982 - 27146928
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  27146982 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattg 27146928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 336 - 392
Target Start/End: Complemental strand, 39047044 - 39046988
Alignment:
Q  336 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||    
T  39047044 tttagtaactttaaatagttaatttttctcaaagtttatgaaatcaatgcattgaaa 39046988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 40872350 - 40872296
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||    
T  40872350 gtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattg 40872296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 42265546 - 42265489
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    |||||||||||||| ||||||| |||||||| || ||||||||||||||| |||||||    
T  42265546 gtttagtaactttatatagtaagtttttgtctaagtttatgaaatcaatgcattgaaa 42265489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 40459048 - 40458994
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    ||||| |||||||||| ||||| ||||||||||| ||||||||||||||| ||||    
T  40459048 gtttaataactttaaagagtaagtttttgtcaaagtttatgaaatcaatgcattg 40458994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 390 - 427
Target Start/End: Complemental strand, 14328445 - 14328408
Alignment:
Q  390 aaattttttaaagaatgcccttaaagcactcattaaca 427  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14328445 aaattttttaaagaatgcccttaaatcactcattaaca 14328408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 41520775 - 41520721
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    ||||| |||||||||||||||| ||||| ||||| ||||| ||||||||| ||||    
T  41520775 gtttaataactttaaatagtaagtttttatcaaagtttataaaatcaatgcattg 41520721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 389
Target Start/End: Complemental strand, 8415783 - 8415746
Alignment:
Q  352 agtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  8415783 agtaagtttttgtcaaagtttatgaaatcaatgtattg 8415746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 546
Target Start/End: Original strand, 14688748 - 14688829
Alignment:
Q  465 ttagaaataatacattcaacacattcaaattttaaaaaacaatttttagtacatgaaagttataaattgttttcttttttaa 546  Q
    |||||||| || ||||||||||||| ||| ||||||||  |||||||  ||||| ||| ||||||||| ||||  |||||||    
T  14688748 ttagaaatgattcattcaacacattgaaagtttaaaaactaattttttttacataaaacttataaattatttttatttttaa 14688829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 20180219 - 20180276
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| |||| |||||||    
T  20180219 gtttaggaactttaaatagtaaatttttgtcaaagtttatgaaattaatgcattgaaa 20180276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 54495591 - 54495534
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||    
T  54495591 gtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattgaaa 54495534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 339 - 389
Target Start/End: Original strand, 46088516 - 46088566
Alignment:
Q  339 agtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  46088516 agtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattg 46088566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 20787503 - 20787446
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    ||||||| | ||||||| ||||| |||||||||| |||||||||||||||||||||||    
T  20787503 gtttagtgattttaaatggtaaaattttgtcaaagtttatgaaatcaatgtattgaaa 20787446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 391
Target Start/End: Complemental strand, 10042956 - 10042900
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaa 391  Q
    ||||| |||||||||||||||| ||||| | ||||||||||||||||||| ||||||    
T  10042956 gtttaataactttaaatagtaagtttttattaaaatttatgaaatcaatgcattgaa 10042900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 21988458 - 21988506
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaat 383  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||||||||    
T  21988458 gtttaataactttaaatagtaagtttttgtcaaagtttatgaaatcaat 21988506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 336 - 379
Target Start/End: Complemental strand, 28695875 - 28695832
Alignment:
Q  336 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaat 379  Q
    |||| |||||||||||||||||||||||||||| ||||||||||    
T  28695875 tttaataactttaaatagtaaatttttgtcaaagtttatgaaat 28695832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 5047314 - 5047260
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||||||||| ||||| | ||| ||||||||||||||| ||||    
T  5047314 gtttagtaactttaaatagtaagttttttttaaagtttatgaaatcaatgcattg 5047260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 24754038 - 24753984
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||| ||||||||||||||||||||| | ||| ||||||||||||||| ||||    
T  24754038 gtttagaaactttaaatagtaaatttttatgaaagtttatgaaatcaatgcattg 24753984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 335 - 392
Target Start/End: Original strand, 5091839 - 5091895
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    |||||||||||||||||| ||||||||||| ||| |||||| |||||||| |||||||    
T  5091839 gtttagtaactttaaataataaatttttgttaaattttatg-aatcaatgcattgaaa 5091895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 46521614 - 46521565
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 384  Q
    ||||||| |||||||||| ||||||||||| ||| |||||||||||||||    
T  46521614 gtttagtgactttaaataataaatttttgttaaagtttatgaaatcaatg 46521565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 546
Target Start/End: Original strand, 21240162 - 21240230
Alignment:
Q  478 attcaacacattcaaattttaaaaaacaatttttagtacatgaaagttataaattgttttcttttttaa 546  Q
    |||||||||||| |||| ||||||||||| ||||  ||| |||||||||| |||||||| | |||||||    
T  21240162 attcaacacattgaaatattaaaaaacaactttttctacgtgaaagttatcaattgtttccatttttaa 21240230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 389
Target Start/End: Original strand, 30161349 - 30161397
Alignment:
Q  341 taactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||| ||||    
T  30161349 taactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattg 30161397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 392
Target Start/End: Original strand, 34124531 - 34124571
Alignment:
Q  352 agtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  34124531 agtaaatttttgtcaaagtttatgaaatcaatgcattgaaa 34124571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 498 - 546
Target Start/End: Complemental strand, 52820643 - 52820595
Alignment:
Q  498 aaaaaacaatttttagtacatgaaagttataaattgttttcttttttaa 546  Q
    ||||||||||||||  ||||| |||||||| |||||||||| |||||||    
T  52820643 aaaaaacaattttttatacataaaagttattaattgttttcatttttaa 52820595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 18375172 - 18375115
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  18375172 gtttagtgactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattgaaa 18375115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 27501731 - 27501785
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||    
T  27501731 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaattaatgcattg 27501785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 388
Target Start/End: Complemental strand, 63992 - 63942
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtatt 388  Q
    |||||||||||||   |||||| |||||||||||||||||||||| ||||||||    
T  63992 gtttagtaacttt---tagtaagtttttgtcaaaatttatgaaattaatgtatt 63942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 336 - 392
Target Start/End: Original strand, 11465622 - 11465678
Alignment:
Q  336 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 392  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||||||    
T  11465622 tttagaaactttaaatagtaagtttttgtcaaagtttatgaaatcactgtattgaaa 11465678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 4275203 - 4275257
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    ||||| |||||||||||| ||| ||||||||||| ||||| ||||||||||||||    
T  4275203 gtttaataactttaaataataagtttttgtcaaagtttataaaatcaatgtattg 4275257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 378
Target Start/End: Complemental strand, 32734790 - 32734748
Alignment:
Q  336 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaa 378  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  32734790 tttagtaactttaagtagtaagtttttgtcaaaatttatgaaa 32734748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 389
Target Start/End: Complemental strand, 53605764 - 53605710
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 389  Q
    |||||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||||    
T  53605764 gtttagtaactttaaatagtaagtttttatcaaagtttataaaatcaatgcattg 53605710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 53641670 - 53641719
Alignment:
Q  335 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 384  Q
    ||||| ||||||| |||||||| ||||||||||| |||||||||||||||    
T  53641670 gtttaataactttgaatagtaagtttttgtcaaagtttatgaaatcaatg 53641719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 384
Target Start/End: Original strand, 30364049 - 30364097
Alignment:
Q  336 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 384  Q
    ||||| |||||||||||| || ||||||| ||| |||||||||||||||    
T  30364049 tttagcaactttaaatagcaagtttttgttaaagtttatgaaatcaatg 30364097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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