View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5829-Insertion-3 (Length: 503)
Name: NF5829-Insertion-3
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5829-Insertion-3 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (2 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 9 - 503
Target Start/End: Complemental strand, 8082 - 7588
Alignment:
| Q |
9 |
ccattatcatcaacagatttacaagaattgctggcgagctttttggcatgttgattacagtcttattcattcaagaagctatcaaggttagtttctgata |
108 |
Q |
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| T |
8082 |
ccattatcatcaacagatttacaagaattgctggcgagctttttggcatgttgattacagtcttattcattcaagaagctatcaaggttagtttctgata |
7983 |
T |
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| Q |
109 |
tattagtttgtttttggtggtatcaactatcaaatgaaacatgaatttggcataacacataaggaaaagactttgatatattattgtattgaatctttag |
208 |
Q |
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| T |
7982 |
tattagtttgtttttggtggtatcaactatcaaatgaaacatgaatttggcataacgcataagaaaaagactttgatatattattgtattgaatctttag |
7883 |
T |
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| Q |
209 |
ggaatggtaagtgagtttgaagttcctaaagagggggatccaacattggataaataccaatttcattggttgtatgcaaatggattgctaggaattatat |
308 |
Q |
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| T |
7882 |
ggaatggtaagtgagtttgaagttcctaaagagggggatccaacattggataaataccaatttcattggttgtatgcaaatggattgctaggaattatat |
7783 |
T |
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| Q |
309 |
tcactttttgccttctctatacttctttgaaaagcagaagagcaaggtcgtggttatatggaacaggtttgtcaagaaaactcttggtgataatttgagg |
408 |
Q |
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| T |
7782 |
tcactttttgccttctctatacttctttgaaaagcagaaaagcaaggtcatggttatatggaacaggtttgtcaagaaaactcttggtgataatttgagg |
7683 |
T |
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| Q |
409 |
ttttgagccatcattagtggatttggattcagccacatcttggactgcccatattttaatttcttttaaaaatatcgaacttgaagtatcgactg |
503 |
Q |
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| T |
7682 |
ctttgagccatcattagtggatttggattcagccacatcttggactgcccatattttaatttcttttaaaaatatcgaacttgaagtatcgactg |
7588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 199 - 503
Target Start/End: Complemental strand, 7888 - 7584
Alignment:
| Q |
199 |
gaatctttagggaatggtaagtgagtttgaagttcctaaagagggggatccaacattggataaataccaatttcattggttgtatgcaaatggattgcta |
298 |
Q |
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| T |
7888 |
gaatctttagggaatggtaagtgagtttgaagttcctaaagagggggatccaacattggataaataccaatttcattggttgtatgcaaatggattgcta |
7789 |
T |
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| Q |
299 |
ggaattatattcactttttgccttctctatacttctttgaaaagcagaagagcaaggtcgtggttatatggaacaggtttgtcaagaaaactcttggtga |
398 |
Q |
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| T |
7788 |
ggaattatattcactttttgccttctctatacttctttgaaaagcagaagagcaaggtcatggttatatggaacaggtttgtcaagaaaactcttggtga |
7689 |
T |
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| Q |
399 |
taatttgaggttttgagccatcattagtggatttggattcagccacatcttggactgcccatattttaatttcttttaaaaatatcgaacttgaagtatc |
498 |
Q |
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| T |
7688 |
taatttgaggctttgagccatcattagtggatttggattcagccacatcttggactgcccatattttaatttcttttaaaaatatcgaacttgaagtatc |
7589 |
T |
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| Q |
499 |
gactg |
503 |
Q |
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| T |
7588 |
gactg |
7584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 8006 - 7890
Alignment:
| Q |
9 |
ccattatcatcaacagatttacaagaattgctggcgagctttttggcatgttgattacagtcttattcattcaagaagctatcaaggttagtttctgata |
108 |
Q |
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| T |
8006 |
ccattatcatcaacagatttacaagaattgctggcgagctttttggcatgttgattacagtcttattcattcaagaagctatcaaggttagttcctgata |
7907 |
T |
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| Q |
109 |
tattagtttgtttttgg |
125 |
Q |
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| T |
7906 |
tattagtttgtttttgg |
7890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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