View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5829-Insertion-4 (Length: 468)
Name: NF5829-Insertion-4
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5829-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 9 - 458
Target Start/End: Original strand, 46894655 - 46895103
Alignment:
| Q |
9 |
gtcaatgtccgacaccgatacatgtgattacaataaattgcgtcattttatcaaataaattatcagtgtcaactcgtcaatgtcagtagaaaaacagtat |
108 |
Q |
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| T |
46894655 |
gtcaatgtacgacac-gatacatgtgattacactaaattgcgtcattttatcaaataaattatcagtgtcaactcgtcaatgtcagtagaaaaacagtat |
46894753 |
T |
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| Q |
109 |
aagaacatagcaacgaaacagacctggaagaccagaaggaatggaccatgtgaatgaatcgaagaattcagtaatattaacgtcaggaaacttttctttg |
208 |
Q |
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| T |
46894754 |
aagaacatagcaacgaaacagacctggaagaccagaaggaatggaccatgtgaatgaatcgaagaattcagtaatattaacgtcaggaaacttttctttg |
46894853 |
T |
|
| Q |
209 |
acatagcgttcaacggaaagcttgcttttaaatataatcgagcttcggtttgcaacaagacgatgaggaacatacagataccggtctcgataattaccgt |
308 |
Q |
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| T |
46894854 |
acatagcgttcaacggaaagcttgcttttaaatataatcgagcttcggtttgcaacaagacgatgaggaacatacagataccggtctcgatagttaccgt |
46894953 |
T |
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| Q |
309 |
tatttgaaatcctcttaccggatttccatcgccaaatgtcaccgggattcggaaaattctccggcgcatagggtaaaccttcgccggattgttcaggtgc |
408 |
Q |
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| T |
46894954 |
tatttgaaatcctcttaccggatttccatcgccaaatgtcaccgggattcggaaaattctccggcgcatagggtaaaccttcgccggattgttcaggtgc |
46895053 |
T |
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| Q |
409 |
caccggcgcaacaagatttgacgagttgctgccaccattgctagccacag |
458 |
Q |
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| T |
46895054 |
caccggcgcaacaagatttgacgagttgctgccaccattgctagccacag |
46895103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 32154685 - 32154630
Alignment:
| Q |
9 |
gtcaatgtccgacaccgatacatgtgattacaataaattgcgtcattttatcaaat |
64 |
Q |
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| T |
32154685 |
gtcaatgtccgacaccgagacatgtgattgcagtaaattgtgtcattttctcaaat |
32154630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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