View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5829-Insertion-8 (Length: 85)
Name: NF5829-Insertion-8
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5829-Insertion-8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 2e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-36
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 8974068 - 8973992
Alignment:
| Q |
9 |
agaagtttcctagataaaaagataagccagagagtgagactccattaccaagtgtaagattcccacgaaactcacga |
85 |
Q |
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| T |
8974068 |
agaagtttcctagataaaaagataagccagagagtgagactccattaccaagtgtaagattcccacgaaactcacga |
8973992 |
T |
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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 8962672 - 8962608
Alignment:
| Q |
9 |
agaagtttcctagataaaaagataagccagagagtgagactccattaccaagtgtaagattccca |
73 |
Q |
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| T |
8962672 |
agaagtttcctatataggaagagaagccggtgagtgagactccattaccaagtgtaagattccca |
8962608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 8946449 - 8946494
Alignment:
| Q |
40 |
gagtgagactccattaccaagtgtaagattcccacgaaactcacga |
85 |
Q |
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| T |
8946449 |
gagtgagactccattaccaagtgtaagagtcgcatgaaattcacga |
8946494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 21687566 - 21687622
Alignment:
| Q |
9 |
agaagtttcctagataaaaagataagccagagagtgagactccattaccaagtgtaa |
65 |
Q |
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| T |
21687566 |
agaagtttcctagatagaaagacaaaccagtgagtgagactccattaccaagtgtaa |
21687622 |
T |
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