View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5829_high_15 (Length: 245)
Name: NF5829_high_15
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5829_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 43179695 - 43179936
Alignment:
| Q |
1 |
ttttgtggttctcaattaaaaatgattttgtctttagaatttattctaacgtaaagctacaaggtatagcttttgcttccaaatgtaatattacactcaa |
100 |
Q |
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| T |
43179695 |
ttttatggttctcaattaaaaatgattttgtctctagaatttattctaacgtaaagctacgaggtataggttttgcttccaaatgtaatattacactcaa |
43179794 |
T |
|
| Q |
101 |
atttaatattcaaatcatttcacttgaacgcattcaaatacaagttattccaccttaaaacaaaactctaatcaaaatcaatttttgtcacggtgaaatc |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43179795 |
atttaatattcaaatcatttcacttgaacgcgttcaaatacaagttattctaccttaaaacaaaactctaatcaaaatcaatttttgtcacggtgaaatc |
43179894 |
T |
|
| Q |
201 |
agacatacaccaagtcttttcacacatattatgtagtataat |
242 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |
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| T |
43179895 |
agacatacaccaagtcttttcatgcatattatgtagtataat |
43179936 |
T |
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