View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5829_high_17 (Length: 237)
Name: NF5829_high_17
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5829_high_17 |
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| [»] scaffold0051 (2 HSPs) |
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Alignment Details
Target: scaffold0051 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 9581 - 9682
Alignment:
| Q |
136 |
gtgaacaatacaaattttgaggatctaacaagttttgcaacgtaaaacaatgaccaacaaatcaacaatacacatcagcacataaaggtaacactgaaag |
235 |
Q |
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| T |
9581 |
gtgaacaatacaaattttgaggatctaacaagttttgcaacgtaaaacaatgaccaacaaatcaacactacacatcagcacataaaggtaacactgaaag |
9680 |
T |
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| Q |
236 |
tc |
237 |
Q |
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|| |
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| T |
9681 |
tc |
9682 |
T |
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Target: scaffold0051; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 9465 - 9534
Alignment:
| Q |
18 |
acatgaaaagtaaaggataagtaatatagattctaagctattgttcaaagatattttccagctctaggcatt |
89 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9465 |
acataaaaagtaaaggataagtaata--gattctaagctattgttcaaagatattttccagctctaggcatt |
9534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 51414955 - 51415025
Alignment:
| Q |
16 |
caacatgaaaagtaaaggataagtaatatagattctaagctattgttcaaagatattttccagctctaggc |
86 |
Q |
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| T |
51414955 |
caacatgaaaagaaaaggataagtaatgtagattctaggtcattgttcaaagatattttccaggtctaggc |
51415025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 8529756 - 8529826
Alignment:
| Q |
18 |
acatgaaaagtaaaggataagtaatatagattctaagctattgttcaaagatattttccagctctaggcat |
88 |
Q |
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| T |
8529756 |
acatgaaaaggaaaggataagtaatctagattctaggtcactgttcaaagatattttcaagggctaggcat |
8529826 |
T |
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