View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5829_high_5 (Length: 444)
Name: NF5829_high_5
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5829_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 49203471 - 49203046
Alignment:
| Q |
1 |
ctgcacatcatctttttctgggctcatatcacccacattttcagcatgctttgggactatagcctcatctgttttatcctctcttgtatccaaggctggt |
100 |
Q |
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| T |
49203471 |
ctgcacatcatctttttctgggctcatatcacccacattttcagcatgccttgggactataacctcatctgttttatcctctcttgtatccaaggctggt |
49203372 |
T |
|
| Q |
101 |
tccaaacctttaacttcctctgaatcctggtaaaagtaaatnnnnnnnnntgagagagttgttaatttattatctgtcaaccaatggtatggaacattat |
200 |
Q |
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| T |
49203371 |
tccaaacctttaacttcctctgaatcctggtaaaagtaaataaaaaaa--tgagagagttgttaatttattatctatcaaccaatggtatggaacattat |
49203274 |
T |
|
| Q |
201 |
atgccaccaccgtgttgaactaaaactaaaaaatttcaagtttgcatatggtggtgcctaacagacagatgactggcaacttgataggcacgacaaaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49203273 |
atgccaccaccgtgttgaactaaaactaaaaaattttaagtttgcatatggtggtgcctaacagacagatgactggcaacttgataggcacgaaaaaatg |
49203174 |
T |
|
| Q |
301 |
aaaaattaactatgttattcatattatactgcaatgtatgtccacagaaaatggccactgtttcttcataatccaagtaacttgtgagagagagattcat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49203173 |
aaaaattaactatgttattcatattatactgcaatgtatgtccacagaaaatggccactgtttcttcataatccaagtaacttgtgagagagagattcat |
49203074 |
T |
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| Q |
401 |
gataaaaactttgaaggaaagtagctca |
428 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
49203073 |
gataaaaactttgaaggaaagtagctca |
49203046 |
T |
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