View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5829_high_7 (Length: 360)
Name: NF5829_high_7
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5829_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 21640219 - 21640564
Alignment:
| Q |
11 |
atacttgcatcccatataattcagtcttgagcatgcaataacggtaaaatttgtagggagagtttttcgtccatttgggtcatataaaactctagggatt |
110 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21640219 |
atacttgcatcccatataattcaatcttgagcatgcaacaacggtaaaatttgtagggagaatttttcgtccatttgggtcatataaaactctagggatt |
21640318 |
T |
|
| Q |
111 |
agtctccgttgttgcgcaagccgacgatactcgatttnnnnnnnnnnnnnnnnntactcgtatcccatatctattttttagcaatcaacaagtaa----- |
205 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21640319 |
agtctccgttgttgcgcaagccgacaatactcgatttaaaaaaaaataaaaaa-tactcgtatcccatatctattttttagcaatcaacaagtaaattaa |
21640417 |
T |
|
| Q |
206 |
ttactctctcaatcatggtaactctatctatacatcttcgttgattcattcttccta----tctctatctctctagctggccacttgcaacgtcaatgga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21640418 |
ttactctctcaatcatggtaactctatctatatatcttcgttgattcattcttcctagctatctctatctctctagctggccacttgcaacgtcaatgga |
21640517 |
T |
|
| Q |
302 |
aactgaccaaaaataagaggaaaatagaatttaaaaatgactaatgt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
21640518 |
aactgaccaaaaataagaggaaaatagaaatgaaaaatgactaatgt |
21640564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University