View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5829_high_8 (Length: 355)

Name: NF5829_high_8
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5829_high_8
NF5829_high_8
[»] chr6 (6 HSPs)
chr6 (137-297)||(24797256-24797417)
chr6 (75-128)||(9975048-9975101)
chr6 (75-123)||(24797475-24797523)
chr6 (1-43)||(24797556-24797598)
chr6 (82-124)||(29408064-29408106)
chr6 (75-132)||(10345990-10346047)
[»] chr7 (9 HSPs)
chr7 (75-132)||(26402778-26402835)
chr7 (75-124)||(17883309-17883358)
chr7 (75-132)||(41514287-41514344)
chr7 (75-129)||(5248629-5248683)
chr7 (75-124)||(47405226-47405275)
chr7 (75-129)||(26804015-26804069)
chr7 (89-135)||(2347467-2347513)
chr7 (218-284)||(34397407-34397473)
chr7 (83-132)||(33899740-33899789)
[»] chr8 (8 HSPs)
chr8 (75-136)||(38236253-38236314)
chr8 (76-129)||(44254124-44254177)
chr8 (75-129)||(33650064-33650118)
chr8 (76-129)||(34336470-34336523)
chr8 (81-129)||(15271074-15271122)
chr8 (81-132)||(9774800-9774851)
chr8 (75-129)||(42704361-42704415)
chr8 (83-135)||(44960513-44960565)
[»] chr1 (11 HSPs)
chr1 (75-129)||(45925549-45925603)
chr1 (75-132)||(44958303-44958360)
chr1 (77-129)||(43492126-43492178)
chr1 (75-132)||(3483093-3483150)
chr1 (75-132)||(25670767-25670824)
chr1 (75-129)||(698822-698876)
chr1 (75-119)||(49003715-49003759)
chr1 (75-129)||(28188678-28188731)
chr1 (75-124)||(31822449-31822498)
chr1 (218-278)||(3996563-3996623)
chr1 (85-129)||(30494114-30494158)
[»] chr5 (11 HSPs)
chr5 (75-129)||(591220-591274)
chr5 (75-129)||(23129398-23129452)
chr5 (75-129)||(27146928-27146982)
chr5 (76-132)||(39046988-39047044)
chr5 (75-129)||(40872296-40872350)
chr5 (75-132)||(42265489-42265546)
chr5 (75-129)||(40458994-40459048)
chr5 (130-167)||(14328408-14328445)
chr5 (75-129)||(41520721-41520775)
chr5 (92-129)||(8415746-8415783)
chr5 (205-286)||(14688748-14688829)
[»] chr4 (15 HSPs)
chr4 (75-132)||(20180219-20180276)
chr4 (75-132)||(54495534-54495591)
chr4 (79-129)||(46088516-46088566)
chr4 (75-132)||(20787446-20787503)
chr4 (75-131)||(10042900-10042956)
chr4 (75-123)||(21988458-21988506)
chr4 (76-119)||(28695832-28695875)
chr4 (75-129)||(5047260-5047314)
chr4 (75-129)||(24753984-24754038)
chr4 (75-132)||(5091839-5091895)
chr4 (75-124)||(46521565-46521614)
chr4 (218-286)||(21240162-21240230)
chr4 (81-129)||(30161349-30161397)
chr4 (92-132)||(34124531-34124571)
chr4 (238-286)||(52820595-52820643)
[»] chr2 (3 HSPs)
chr2 (75-132)||(18375115-18375172)
chr2 (75-129)||(27501731-27501785)
chr2 (75-128)||(63942-63992)
[»] chr3 (6 HSPs)
chr3 (76-132)||(11465622-11465678)
chr3 (75-129)||(4275203-4275257)
chr3 (76-118)||(32734748-32734790)
chr3 (75-129)||(53605710-53605764)
chr3 (75-124)||(53641670-53641719)
chr3 (76-124)||(30364049-30364097)


Alignment Details
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 297
Target Start/End: Complemental strand, 24797417 - 24797256
Alignment:
Q  137 ttaaagaatgcccttaaagcactcattaacaaaacc-ttagtaaaaatatccaaagtaaaaatttgatgttagaaataatacattcaacacattcaaatt 235  Q
    ||||||| |||||||| |||   | ||||||| ||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  24797417 ttaaagagtgcccttagagctaacgttaacaagaccgttagtaaaaatatccaaagtaaaaaatttatgttagaaataatacattcaacacattcaaatt 24797318  T
Q  236 ttaaaaaacaatttttagtacatgaaagttataaattgttttcttttttaatgcttagatcc 297  Q
    ||    || ||  |||| | ||||||||||||||||||||||||||||||||||||||||||    
T  24797317 ttttttaaaaaaatttacttcatgaaagttataaattgttttcttttttaatgcttagatcc 24797256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 9975048 - 9975101
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtatt 128  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  9975048 gtttagtaactttaaatagtaaatttttgttaaagtttatgaaatcaatatatt 9975101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 24797523 - 24797475
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaat 123  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  24797523 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaat 24797475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24797598 - 24797556
Alignment:
Q  1 ttcaaccttaaaggctcacaaaaaatgctaacaagaaccctaa 43  Q
    ||||||||||||||||||||||||||||||||||||||| |||    
T  24797598 ttcaaccttaaaggctcacaaaaaatgctaacaagaaccttaa 24797556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 29408106 - 29408064
Alignment:
Q  82 aactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 124  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  29408106 aactttaaatagtaagtttttgtcaaaatttatgaaatcaatg 29408064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 10345990 - 10346047
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    |||||||||  |||| |||||||||||||| | |||||||| |||||||| |||||||    
T  10345990 gtttagtaatcttaattagtaaatttttgttagaatttatgtaatcaatgcattgaaa 10346047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 26402778 - 26402835
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26402778 gtttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgtattgaaa 26402835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 17883309 - 17883358
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 124  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17883309 gtttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatg 17883358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 41514287 - 41514344
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  41514287 gtttagtaactttaaatagtaagttttagtcaaagtttatgaaatcaatgtattgaaa 41514344  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 5248629 - 5248683
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  5248629 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattg 5248683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 47405226 - 47405275
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 124  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  47405226 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatg 47405275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 26804015 - 26804069
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    ||||| |||||||||||||||| ||||||||||| ||||| ||||||||| ||||    
T  26804015 gtttaataactttaaatagtaagtttttgtcaaagtttataaaatcaatgcattg 26804069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 2347513 - 2347467
Alignment:
Q  89 aatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaattt 135  Q
    |||||||||||||| | |||||||||| |||||||| ||||||||||    
T  2347513 aatagtaaatttttattaaaatttatgtaatcaatgcattgaaattt 2347467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 34397407 - 34397473
Alignment:
Q  218 attcaacacattcaaattttaaaaaacaatttttagtacatgaaagttataaattgttttctttttt 284  Q
    |||||||||||| |||||||||||||||||||||   |||| ||| ||||  |||||||| ||||||    
T  34397407 attcaacacattaaaattttaaaaaacaatttttttcacataaaatttatttattgttttatttttt 34397473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 33899740 - 33899789
Alignment:
Q  83 actttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    |||||||||| ||| ||||||| ||||||||||||||||||  |||||||    
T  33899740 actttaaatattaagtttttgttaaaatttatgaaatcaatacattgaaa 33899789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 38236253 - 38236314
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaatttt 136  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  38236253 gtttaataactttaaatagtaaaattttgtcaaaatttatgaaatcaatgcattgaaatttt 38236314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 44254124 - 44254177
Alignment:
Q  76 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  44254124 tttagtaactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcattg 44254177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 33650118 - 33650064
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  33650118 gtttagtaactttaaatagtaagtttttgtcaaaatgtatgaaatcaatgcattg 33650064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 34336470 - 34336523
Alignment:
Q  76 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  34336470 tttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattg 34336523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 15271122 - 15271074
Alignment:
Q  81 taactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  15271122 taactttaaatagtaagtttttgtcaaaatttatgaaatcaatgcattg 15271074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 9774851 - 9774800
Alignment:
Q  81 taactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    ||||||||||||||||||||||||||||  |||||||||||||| |||||||    
T  9774851 taactttaaatagtaaatttttgtcaaagcttatgaaatcaatgcattgaaa 9774800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 42704415 - 42704361
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  42704415 gtttactaactttaaatagtaagtttttgtcaaaatttatgaaattaatgcattg 42704361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 44960565 - 44960513
Alignment:
Q  83 actttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaattt 135  Q
    ||||| |||||||||||||| | |||||||||| |||||||| ||||||||||    
T  44960565 acttttaatagtaaatttttatgaaaatttatgtaatcaatgcattgaaattt 44960513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 45925603 - 45925549
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  45925603 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgtattg 45925549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 44958303 - 44958360
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  44958303 gtttagtaactttaaatagtaaatttttgttaaagtttatgaaatcaatgcattgaaa 44958360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 43492126 - 43492178
Alignment:
Q  77 ttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  43492126 ttagtaactttaaatagtaaatttttgtcaaagtttatgaaatcaatgcattg 43492178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 3483150 - 3483093
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||    
T  3483150 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcgatgcattgaaa 3483093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 25670767 - 25670824
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    |||||||||||||||||||||| ||||||| ||| ||||||||||||||| |||||||    
T  25670767 gtttagtaactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattgaaa 25670824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 698822 - 698876
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||    
T  698822 gtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattg 698876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 49003759 - 49003715
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaat 119  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||    
T  49003759 gtttaataactttaaatagtaaatttttgtcaaagtttatgaaat 49003715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 28188731 - 28188678
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    ||||| |||||||||||||||| |||||||  |||||||||||||||||| ||||    
T  28188731 gtttaataactttaaatagtaagtttttgt-taaatttatgaaatcaatgcattg 28188678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 31822498 - 31822449
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 124  Q
    |||||||||||||| |||||||  |||||||||| ||||| |||||||||    
T  31822498 gtttagtaactttagatagtaagcttttgtcaaagtttataaaatcaatg 31822449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 3996623 - 3996563
Alignment:
Q  218 attcaacacattcaaattttaaaaaacaatttttagtacatgaaagttataaattgttttc 278  Q
    |||||||| ||| |||| | ||||||||||||||  |||||||||||||| |||| |||||    
T  3996623 attcaacatattgaaatatcaaaaaacaatttttcttacatgaaagttatcaattattttc 3996563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 30494158 - 30494114
Alignment:
Q  85 tttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||| ||||||| |||  |||||||||||||||||||    
T  30494158 tttaaatagtaagtttttgttaaagattatgaaatcaatgtattg 30494114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 591220 - 591274
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  591220 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattg 591274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 23129452 - 23129398
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  23129452 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattg 23129398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 27146982 - 27146928
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  27146982 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattg 27146928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 39047044 - 39046988
Alignment:
Q  76 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||    
T  39047044 tttagtaactttaaatagttaatttttctcaaagtttatgaaatcaatgcattgaaa 39046988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 40872350 - 40872296
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||| ||||    
T  40872350 gtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattg 40872296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 42265546 - 42265489
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    |||||||||||||| ||||||| |||||||| || ||||||||||||||| |||||||    
T  42265546 gtttagtaactttatatagtaagtttttgtctaagtttatgaaatcaatgcattgaaa 42265489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 40459048 - 40458994
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    ||||| |||||||||| ||||| ||||||||||| ||||||||||||||| ||||    
T  40459048 gtttaataactttaaagagtaagtttttgtcaaagtttatgaaatcaatgcattg 40458994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 14328445 - 14328408
Alignment:
Q  130 aaattttttaaagaatgcccttaaagcactcattaaca 167  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14328445 aaattttttaaagaatgcccttaaatcactcattaaca 14328408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 41520775 - 41520721
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    ||||| |||||||||||||||| ||||| ||||| ||||| ||||||||| ||||    
T  41520775 gtttaataactttaaatagtaagtttttatcaaagtttataaaatcaatgcattg 41520721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 8415783 - 8415746
Alignment:
Q  92 agtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  8415783 agtaagtttttgtcaaagtttatgaaatcaatgtattg 8415746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 14688748 - 14688829
Alignment:
Q  205 ttagaaataatacattcaacacattcaaattttaaaaaacaatttttagtacatgaaagttataaattgttttcttttttaa 286  Q
    |||||||| || ||||||||||||| ||| ||||||||  |||||||  ||||| ||| ||||||||| ||||  |||||||    
T  14688748 ttagaaatgattcattcaacacattgaaagtttaaaaactaattttttttacataaaacttataaattatttttatttttaa 14688829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 20180219 - 20180276
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| |||| |||||||    
T  20180219 gtttaggaactttaaatagtaaatttttgtcaaagtttatgaaattaatgcattgaaa 20180276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 54495591 - 54495534
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||    
T  54495591 gtttagtaactttaaatagtaagtttttatcaaagtttatgaaatcaatgcattgaaa 54495534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 46088516 - 46088566
Alignment:
Q  79 agtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  46088516 agtaactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattg 46088566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 20787503 - 20787446
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    ||||||| | ||||||| ||||| |||||||||| |||||||||||||||||||||||    
T  20787503 gtttagtgattttaaatggtaaaattttgtcaaagtttatgaaatcaatgtattgaaa 20787446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 10042956 - 10042900
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaa 131  Q
    ||||| |||||||||||||||| ||||| | ||||||||||||||||||| ||||||    
T  10042956 gtttaataactttaaatagtaagtttttattaaaatttatgaaatcaatgcattgaa 10042900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 21988458 - 21988506
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaat 123  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||||||||    
T  21988458 gtttaataactttaaatagtaagtttttgtcaaagtttatgaaatcaat 21988506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 28695875 - 28695832
Alignment:
Q  76 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaat 119  Q
    |||| |||||||||||||||||||||||||||| ||||||||||    
T  28695875 tttaataactttaaatagtaaatttttgtcaaagtttatgaaat 28695832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 5047314 - 5047260
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||||||||| ||||| | ||| ||||||||||||||| ||||    
T  5047314 gtttagtaactttaaatagtaagttttttttaaagtttatgaaatcaatgcattg 5047260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 24754038 - 24753984
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||| ||||||||||||||||||||| | ||| ||||||||||||||| ||||    
T  24754038 gtttagaaactttaaatagtaaatttttatgaaagtttatgaaatcaatgcattg 24753984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 5091839 - 5091895
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    |||||||||||||||||| ||||||||||| ||| |||||| |||||||| |||||||    
T  5091839 gtttagtaactttaaataataaatttttgttaaattttatg-aatcaatgcattgaaa 5091895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 46521614 - 46521565
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 124  Q
    ||||||| |||||||||| ||||||||||| ||| |||||||||||||||    
T  46521614 gtttagtgactttaaataataaatttttgttaaagtttatgaaatcaatg 46521565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 21240162 - 21240230
Alignment:
Q  218 attcaacacattcaaattttaaaaaacaatttttagtacatgaaagttataaattgttttcttttttaa 286  Q
    |||||||||||| |||| ||||||||||| ||||  ||| |||||||||| |||||||| | |||||||    
T  21240162 attcaacacattgaaatattaaaaaacaactttttctacgtgaaagttatcaattgtttccatttttaa 21240230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 30161349 - 30161397
Alignment:
Q  81 taactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||| ||||    
T  30161349 taactttaaatagtaagtttttgttaaagtttatgaaatcaatgcattg 30161397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 34124531 - 34124571
Alignment:
Q  92 agtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  34124531 agtaaatttttgtcaaagtttatgaaatcaatgcattgaaa 34124571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 52820643 - 52820595
Alignment:
Q  238 aaaaaacaatttttagtacatgaaagttataaattgttttcttttttaa 286  Q
    ||||||||||||||  ||||| |||||||| |||||||||| |||||||    
T  52820643 aaaaaacaattttttatacataaaagttattaattgttttcatttttaa 52820595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 18375172 - 18375115
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  18375172 gtttagtgactttaaatagtaagtttttgtcaaagtttatgaaatcaatgcattgaaa 18375115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 27501731 - 27501785
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| |||| ||||    
T  27501731 gtttagtaactttaaatagtaagtttttgtcaaagtttatgaaattaatgcattg 27501785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 63992 - 63942
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtatt 128  Q
    |||||||||||||   |||||| |||||||||||||||||||||| ||||||||    
T  63992 gtttagtaacttt---tagtaagtttttgtcaaaatttatgaaattaatgtatt 63942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 11465622 - 11465678
Alignment:
Q  76 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattgaaa 132  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||| ||||||||||    
T  11465622 tttagaaactttaaatagtaagtttttgtcaaagtttatgaaatcactgtattgaaa 11465678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 4275203 - 4275257
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    ||||| |||||||||||| ||| ||||||||||| ||||| ||||||||||||||    
T  4275203 gtttaataactttaaataataagtttttgtcaaagtttataaaatcaatgtattg 4275257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 32734790 - 32734748
Alignment:
Q  76 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaa 118  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  32734790 tttagtaactttaagtagtaagtttttgtcaaaatttatgaaa 32734748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 53605764 - 53605710
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatgtattg 129  Q
    |||||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||||    
T  53605764 gtttagtaactttaaatagtaagtttttatcaaagtttataaaatcaatgcattg 53605710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 124
Target Start/End: Original strand, 53641670 - 53641719
Alignment:
Q  75 gtttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 124  Q
    ||||| ||||||| |||||||| ||||||||||| |||||||||||||||    
T  53641670 gtttaataactttgaatagtaagtttttgtcaaagtttatgaaatcaatg 53641719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 30364049 - 30364097
Alignment:
Q  76 tttagtaactttaaatagtaaatttttgtcaaaatttatgaaatcaatg 124  Q
    ||||| |||||||||||| || ||||||| ||| |||||||||||||||    
T  30364049 tttagcaactttaaatagcaagtttttgttaaagtttatgaaatcaatg 30364097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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