View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5829_high_9 (Length: 308)
Name: NF5829_high_9
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5829_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 31737377 - 31737190
Alignment:
| Q |
19 |
attccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcct |
118 |
Q |
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| T |
31737377 |
attccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcct |
31737278 |
T |
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| Q |
119 |
atatctttgcttggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaattcgattatacaaatta |
206 |
Q |
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| T |
31737277 |
atatctttgattggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaattcgattatacaaatta |
31737190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 31737124 - 31737092
Alignment:
| Q |
272 |
tactgtatgggtgcgctactgctgtctgtgctg |
304 |
Q |
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| T |
31737124 |
tactgtatgggtgcgctactgctgtctgtgctg |
31737092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 198
Target Start/End: Complemental strand, 8247214 - 8247039
Alignment:
| Q |
23 |
catgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatat |
122 |
Q |
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| T |
8247214 |
catgctaatgagattatatcaaaaggaatgttggtgtattttgttgcattgatatcgaaagtttcatctccaatggctatgaaggattaccgctctattt |
8247115 |
T |
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| Q |
123 |
ctttgcttggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaattcgattat |
198 |
Q |
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| T |
8247114 |
cattgctaggtagtttatacaaattactcgccaaagttttaacaaggcgtttggcgggaattatgaattctattat |
8247039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 14457238 - 14457274
Alignment:
| Q |
51 |
tgttagcttattttgttgctttgattccaaaagtttc |
87 |
Q |
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| T |
14457238 |
tgttggcttattttgtggctttgattccaaaagtttc |
14457274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 12829338 - 12829238
Alignment:
| Q |
29 |
aatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgc |
128 |
Q |
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| T |
12829338 |
aatgaggaaatcccaaaaggtttgttagcgtattttgttgctttgattccggaagtttcatctcctagggctttgaaggattaccaccctatttctttgc |
12829239 |
T |
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| Q |
129 |
t |
129 |
Q |
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| T |
12829238 |
t |
12829238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 40388063 - 40387947
Alignment:
| Q |
50 |
atgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattac |
149 |
Q |
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||||| |||| |||||| |||||||||| ||||| |||||| |||||| ||||||||||| | | || |||| ||||| || || ||||| ||||||| |
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| T |
40388063 |
atgttggctttttttgtgactttgattcccaaagtgtcatcttcgatggatttgaaggattttaggccaatattcttgctaggatgcttatataaattac |
40387964 |
T |
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| Q |
150 |
ttgccaaggttctagca |
166 |
Q |
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| T |
40387963 |
tagccaaggttttagca |
40387947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 40197959 - 40197872
Alignment:
| Q |
47 |
gggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggtt |
134 |
Q |
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| T |
40197959 |
gggatgttggcttattttgttgcgttaattcctaaagttttgtcccctatggctttgagggattttcaaccgatttctttgcttggtt |
40197872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 4901744 - 4901850
Alignment:
| Q |
26 |
gctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctt |
125 |
Q |
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| T |
4901744 |
gctaatgaggttttaccgaagagtatgttagcttactttgtagctttaattccaaagatttcttcccctttggcttttaaggattttcgtcccatttctt |
4901843 |
T |
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| Q |
126 |
tgcttgg |
132 |
Q |
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| T |
4901844 |
tgcttgg |
4901850 |
T |
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