View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5829_low_11 (Length: 307)
Name: NF5829_low_11
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5829_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 43179621 - 43179340
Alignment:
| Q |
11 |
gaagaacaagcggaggatagaggcacccattcgggcctcctttgatatggcagtttgcagtgtggatttcactgtggtagagagtttgggacaagttttt |
110 |
Q |
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| T |
43179621 |
gaagaacaagcggaggatagaggcacccattcgggcctcctttgatatggcagtttgcagtgtggatttcactgtggtagagagtttgggacaagttttt |
43179522 |
T |
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| Q |
111 |
gagtaaaagtttgtagaaagttgtgcattggcactccctattatgagaacagatagaaccaaactgatcatggttaatctagaataatttaaaggagcca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
43179521 |
gagtaaaagtttgtagaaagttgtgcattggcactccctattatgagaacagatagaactaaactgatcatggttaatctagaacaatttaaaggagcca |
43179422 |
T |
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| Q |
211 |
ttgattaaatcctcttacgtaaaagtttcacttagctagctctagtg-tttctctttgttattgagaagaggggtgtggttt |
291 |
Q |
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| T |
43179421 |
ttgattaaatcctcttacgtaaaagtttcacttagctagctctagtgttttctctttgttattgagaagaggggtgtggttt |
43179340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 43194070 - 43193788
Alignment:
| Q |
12 |
aagaacaagcggaggatagaggcacccattcgggcctcctttgatatggcagtttgcagtgtggatttcactgtggtagagagtttgggacaagtttttg |
111 |
Q |
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|||||||| |||||||| || ||||||||||||||||| ||||||||||| | ||||| |||||||| || |||| ||||||||||||||||| ||| |
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| T |
43194070 |
aagaacaatcggaggatggaagcacccattcgggcctcgtttgatatggcggattgcactgtggattgaacagtggaagagagtttgggacaagaacttg |
43193971 |
T |
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| Q |
112 |
agtaaaagtttgtagaaagttgtgcattggcactccctattatgagaacagatagaaccaaactgatcatggttaatctagaataatttaaaggagccat |
211 |
Q |
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| T |
43193970 |
agtaaaaacttgtagaaagttgtgcattggcactccctattatgaggacaaatagaaccaaactgatcatggttaatctagaacaatttaaagatgacat |
43193871 |
T |
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| Q |
212 |
tgatt--aaatcctcttacgtaaaagtttcacttagctagctctagtg-tttctctttgttattgagaagaggggtgtggttt |
291 |
Q |
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||||| ||||| | || | |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
43193870 |
tgattaaaaatctttgaactaagaagtttcactaagctagctctagtgttttctctttgttattgagaagagtggtgtggttt |
43193788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 43186787 - 43186504
Alignment:
| Q |
11 |
gaagaacaagcggaggatagaggcacccattcgggcctcctttgatatggcagtttgcagtgtggatttcactgtggtagagagtttgggacaagttttt |
110 |
Q |
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||||||||||||||||||||| ||||| ||||| ||||||||||||||||| | ||||| | || || ||| |||||||||||||||||||||| |
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| T |
43186787 |
gaagaacaagcggaggatagaagcaccaattcgtgcctcctttgatatggcggattgcacttgacgttggacaatggaagagagtttgggacaagttttt |
43186688 |
T |
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| Q |
111 |
gagtaaaagtttgtagaaagttgtgcattggcactccctattatgagaacagatagaaccaaactgatcatggttaatctagaataatttaaaggagcca |
210 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||||||||| ||| |||| ||||||| || |||||||||||| |
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| T |
43186687 |
gagtaaaagtttgtagagagttgtgcattgacactccctattatgaggacaaatagaaccaaactgaacattgttattctagaacaacttaaaggagcca |
43186588 |
T |
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| Q |
211 |
ttgattaaatcctcttacgtaa--aagtttcacttagctagctctagtg-tttctctttgttattgagaagaggggtgtggttt |
291 |
Q |
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|||||||||||| | ||| |||||||||| ||||| |||| ||| ||| |||||||| |||||||||| |||||||||| |
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| T |
43186587 |
ttgattaaatccctcaaaataaagaagtttcactaagctaactcttgtgatttttctttgttcttgagaagagaggtgtggttt |
43186504 |
T |
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