View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5829_low_2 (Length: 573)
Name: NF5829_low_2
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5829_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 19 - 563
Target Start/End: Complemental strand, 8946685 - 8946141
Alignment:
| Q |
19 |
gatgttctttcgatttcattaggtccaacttttgatttacctttgaatgaagatccgattgcaatagcctcttttgcagctatggaaaaaggtatttttg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946685 |
gatgttctttcgatttcattaggtccaacttttgatttacctttgaatgaagatccgattgcaatagcctcttttgcagctatggaaaaaggtatttttg |
8946586 |
T |
|
| Q |
119 |
tgtcttgttcagcaggtaatgacggccccgattttaaaactcttcgcaatggaacaccttggttgacaactgttgctgctggtactgtggatcgtgagtt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| || |
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| T |
8946585 |
tgtcttgttcagcaggtaatgacggccccgattttaaaactcttcgcaatggaacaccatggttgacaactgttgctgctggtactatggatcgtgaatt |
8946486 |
T |
|
| Q |
219 |
tcatgcgaatcttacacttggtaatggagtctcactcacaggttggtctaattatctaggaaatttctctgctagcaatttgccaattgttttcatgagt |
318 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8946485 |
tcatgcgactcttacacttggtaatggagtctcactcacaggttggtctaattatctaggaaatttctctgctagcaatttgccaattgttttcatgggt |
8946386 |
T |
|
| Q |
319 |
ttgtgcgacaatgttacagaattaatcaaagtgaagaacaatattgtggtttgtgacgatggagatattattgaacaatatactaatgtgtatcgagcaa |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |
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| T |
8946385 |
ttgtgcgacaatgttacagaattaatcaaagtgaagaacaatattgtggtttgtgacgatggagatattattgaacaatattcttatgtgtatcaagcaa |
8946286 |
T |
|
| Q |
419 |
acgttgttggagctgttttcatatcaaatatatcaaatttcgacttctttagaaaagaagagtatagttttcaagacttaagttatgcaaacatctttat |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8946285 |
acgttgttggagctgttttcatatcaaatatatcaaattttgatttctttagaaaagaagagtatagttttcaagacttaagttatgcaaacatctttat |
8946186 |
T |
|
| Q |
519 |
cagtccaatagatggagaaatcaccaaatcgtacatcaagaataa |
563 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
8946185 |
tagtccaatagatggagaaatcaccaaatcatacatcaagaataa |
8946141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 60 - 374
Target Start/End: Original strand, 8962446 - 8962760
Alignment:
| Q |
60 |
tttgaatgaagatccgattgcaatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaatgacggccccgattttaaaact |
159 |
Q |
| |
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|||| |||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| | || || ||||| ||| |
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| T |
8962446 |
tttgtatgaagatccaattgcaatagccacttttgcagctatggaaaaaggtgtttttgtgtctacttcagcaggtaataatggaccttcctttaacact |
8962545 |
T |
|
| Q |
160 |
cttcgcaatggaacaccttggttgacaactgttgctgctggtactgtggatcgtgagtttcatgcgaatcttacacttggtaatggagtctcactcacag |
259 |
Q |
| |
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|||| |||||||| ||| ||| ||| ||||||||||||| ||||| | |||||||| ||| || ||||||||||||||||||||||||||||||||| | |
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| T |
8962546 |
cttcacaatggaataccatgggtgataactgttgctgctagtactttagatcgtgaattttttgggaatcttacacttggtaatggagtctcactcaccg |
8962645 |
T |
|
| Q |
260 |
gttggtctaattatctaggaaatttctctgctagcaatttgccaattgttttcatgagtttgtgcgacaatgttacagaattaatcaaagtgaagaacaa |
359 |
Q |
| |
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| | ||| ||| ||||||| ||||||||||| ||| | || |||||||||| || |||| |||||| |||||||| |||||| |||||||| | | |
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| T |
8962646 |
gcttctcttcctatataggaaacttctctgctagtaatattcccattgttttcaaaggtatgtgtgacaattttacagaactaatcagagtgaagagcga |
8962745 |
T |
|
| Q |
360 |
tattgtggtttgtga |
374 |
Q |
| |
|
|||||||||||||| |
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|
| T |
8962746 |
gattgtggtttgtga |
8962760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 59 - 353
Target Start/End: Original strand, 8973841 - 8974135
Alignment:
| Q |
59 |
ctttgaatgaagatccgattgcaatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaatgacggccccgattttaaaac |
158 |
Q |
| |
|
||||| |||||||||| | ||||| ||| ||||| |||||||||||| ||| || |||||||| ||||||||||||||| || || |||||||| |
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| T |
8973841 |
ctttgtatgaagatccagtcgcaattgccactttttcagctatggaaaggggtgttgttgtgtctacttcagcaggtaatgatggaccttcctttaaaac |
8973940 |
T |
|
| Q |
159 |
tcttcgcaatggaacaccttggttgacaactgttgctgctggtactgtggatcgtgagtttcatgcgaatcttacacttggtaatggagtctcactcaca |
258 |
Q |
| |
|
||||| |||||||| ||| ||| | | ||| |||||||| ||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| | |
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| T |
8973941 |
tcttcacaatggaataccatgggtaataaccgttgctgcaagtactttggatcgtgagtttcgtgggaatcttacacttggtaatggagtctcactctct |
8974040 |
T |
|
| Q |
259 |
ggttggtctaattatctaggaaatttctctgctagcaatttgccaattgttttcatgagtttgtgcgacaatgttacagaattaatcaaagtgaa |
353 |
Q |
| |
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|| | ||| |||||||||||| ||||||||||| ||| | ||||||||||||||| || ||| |||||| ||||| || ||||||||||||| |
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| T |
8974041 |
ggcttatctttttatctaggaaacttctctgctagtaatattccaattgttttcatgggtaagtgtgacaatattacacaactaatcaaagtgaa |
8974135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 91 - 245
Target Start/End: Original strand, 8957463 - 8957617
Alignment:
| Q |
91 |
tttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaatgacggccccgattttaaaactcttcgcaatggaacaccttggttgacaactg |
190 |
Q |
| |
|
||||||||||||||||||||| ||||||| || |||||| |||||| | || || | || ||||||||| |||||||||||||||| | | ||||| |
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| T |
8957463 |
tttgcagctatggaaaaaggtgtttttgtttccacttcagctggtaataatggtcctgcccttgaaactcttcacaatggaacaccttgggtcataactg |
8957562 |
T |
|
| Q |
191 |
ttgctgctggtactgtggatcgtgagtttcatgcgaatcttacacttggtaatgg |
245 |
Q |
| |
|
| |||||||| ||| ||||| | || ||||| | || ||||||||||| ||||| |
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| T |
8957563 |
tggctgctggaactatggatagagaatttcaagggacccttacacttggaaatgg |
8957617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 374
Target Start/End: Complemental strand, 9949857 - 9949680
Alignment:
| Q |
197 |
ctggtactgtggatcgtgagtttcatgcgaatcttacacttggtaatggagtctcactcacaggttggtctaattatctaggaaatttctctgctagcaa |
296 |
Q |
| |
|
|||||||| |||||||||| ||| || || |||||||||||||||| | | |||||| ||| |||| ||| ||| |||||| ||||||| | | |
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| T |
9949857 |
ctggtactttggatcgtgaattttgtgtgatgcttacacttggtaatgaattatcactcgttagtttgtctgcctatttagaaaatttatctgctaacga |
9949758 |
T |
|
| Q |
297 |
tttgccaattgttttcatgagtttgtgcgacaatgttacagaattaatcaaagtgaagaacaatattgtggtttgtga |
374 |
Q |
| |
|
||| ||||||||||||||||| |||| |||||||||| |||||||| ||| ||||| | || |||||| ||||||| |
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|
| T |
9949757 |
tttttcaattgttttcatgagtatgtgtgacaatgttaaagaattaaacaatgtgaatagaaaaattgtgatttgtga |
9949680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 91 - 374
Target Start/End: Complemental strand, 21687761 - 21687478
Alignment:
| Q |
91 |
tttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaatgacggccccgattttaaaactcttcgcaatggaacaccttggttgacaactg |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||| | || ||| |||||| || ||| ||||||| ||| ||| ||| ||||| |
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|
| T |
21687761 |
tttgcagctatggaaaaaggtatttttgtgtctacttctgcaggtaataatggaccctcgtttaaatctattcataatggaataccatgggtgataactg |
21687662 |
T |
|
| Q |
191 |
ttgctgctggtactgtggatcgtgagtttcatgcgaatcttacacttggtaatggagtctcactcacaggttggtctaattatctaggaaatttctctgc |
290 |
Q |
| |
|
|||||||||||||| |||||||||| ||| | | | |||||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||| |
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|
| T |
21687661 |
ttgctgctggtactttggatcgtgaatttttaggaactgttacacttggtaatggagtctcactcactggtttgtctttctatctaggaaacttctctgc |
21687562 |
T |
|
| Q |
291 |
tagcaatttgccaattgttttcatgagtttgtgcgacaatgttacagaattaatcaaagtgaagaacaatattgtggtttgtga |
374 |
Q |
| |
|
|| |||||| ||||||||||| ||| || |||| |||||||||| |||||||| || |||||||| || |||||||||||||| |
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|
| T |
21687561 |
taacaattttccaattgtttttatgggtatgtgtgacaatgttaaagaattaaacacagtgaagagaaagattgtggtttgtga |
21687478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 30099260 - 30099332
Alignment:
| Q |
65 |
atgaagatccgattgcaatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaa |
137 |
Q |
| |
|
|||||||||| || |||||||| || |||||||||||||||||||| ||| |||| || | ||| |||||||| |
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|
| T |
30099260 |
atgaagatcctatagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaa |
30099332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 30091653 - 30091581
Alignment:
| Q |
65 |
atgaagatccgattgcaatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaa |
137 |
Q |
| |
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|||||||| | || |||||||| ||||||||||||||||| ||||| ||| |||| || | ||| |||||||| |
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|
| T |
30091653 |
atgaagatgctatagcaatagcttcttttgcagctatggagaaagggattgttgtttcgtcttctgcaggtaa |
30091581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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