View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5829_low_20 (Length: 235)

Name: NF5829_low_20
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5829_low_20
NF5829_low_20
[»] scaffold0341 (2 HSPs)
scaffold0341 (1-219)||(12306-12524)
scaffold0341 (52-219)||(4737-4903)
[»] chr1 (12 HSPs)
chr1 (1-219)||(6510626-6510844)
chr1 (52-219)||(6503057-6503224)
chr1 (51-211)||(6515066-6515226)
chr1 (51-219)||(6497722-6497890)
chr1 (51-219)||(6525270-6525438)
chr1 (111-217)||(47770964-47771070)
chr1 (117-219)||(47711620-47711722)
chr1 (120-219)||(47744138-47744237)
chr1 (114-219)||(47758515-47758620)
chr1 (108-192)||(47701359-47701443)
chr1 (51-217)||(47774854-47775020)
chr1 (112-192)||(47640635-47640715)
[»] chr5 (5 HSPs)
chr5 (51-217)||(28828947-28829113)
chr5 (51-217)||(28854608-28854774)
chr5 (111-217)||(27368659-27368765)
chr5 (111-219)||(28860026-28860134)
chr5 (48-181)||(28874533-28874666)
[»] chr8 (1 HSPs)
chr8 (120-219)||(11224791-11224890)
[»] chr3 (1 HSPs)
chr3 (110-175)||(3094891-3094956)


Alignment Details
Target: scaffold0341 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 12306 - 12524
Alignment:
Q  1 tactaactttcataaactaatttaaaaacaaccaatactannnnnnnaacacttactaagttcccacaattctatttgtgttttcctgggtttggtcaac 100  Q
    ||||||||| ||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||     
T  12306 tactaacttgcataaactaatttaaaaacaaccaatactatttttttaatacttactaagttcccacaattctatttgtgttttcctgggtttggtcaat 12405  T
Q  101 accaaaaagccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagt 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12406 actaaaaagccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagt 12505  T
Q  201 cgagaatcctcgtgaaggt 219  Q
    |||||||||||||||||||    
T  12506 cgagaatcctcgtgaaggt 12524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 52 - 219
Target Start/End: Original strand, 4737 - 4903
Alignment:
Q  52 cttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctcttc 151  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||    
T  4737 cttactaagttcccacaattctatttgtgttt-cctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatatgttc 4835  T
Q  152 atccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt 219  Q
    ||||||||||||||| |||||||||||||| | |||||||||||| | ||||||||||| ||||||||    
T  4836 atccaagagaatattacttgctttgagatctctatgaataacacgaaatcgagaatcctggtgaaggt 4903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 6510626 - 6510844
Alignment:
Q  1 tactaactttcataaactaatttaaaaacaaccaatactannnnnnnaacacttactaagttcccacaattctatttgtgttttcctgggtttggtcaac 100  Q
    ||||||||| ||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||||||||||||     
T  6510626 tactaacttgcataaactaatttaaaaacaaccaatactatttttttaatacttactaagttcccacaattctatttgtgttttcctgggtttggtcaat 6510725  T
Q  101 accaaaaagccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagt 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6510726 actaaaaagccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagt 6510825  T
Q  201 cgagaatcctcgtgaaggt 219  Q
    |||||||||||||||||||    
T  6510826 cgagaatcctcgtgaaggt 6510844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 52 - 219
Target Start/End: Original strand, 6503057 - 6503224
Alignment:
Q  52 cttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctcttc 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||    
T  6503057 cttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatatgttc 6503156  T
Q  152 atccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt 219  Q
    ||||||||||||||| |||||||||||||| | |||||||||||| | ||||||||||| ||||||||    
T  6503157 atccaagagaatattacttgctttgagatctctatgaataacacgaaatcgagaatcctggtgaaggt 6503224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 211
Target Start/End: Original strand, 6515066 - 6515226
Alignment:
Q  51 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctctt 150  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||  ||    
T  6515066 acttactaggttcccacaattctatttgtgttttcctgggtttggtccacaccaaaaagtcttgccatgccaaaatcagctatcttaggattcatccgtt 6515165  T
Q  151 catccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctc 211  Q
     ||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  6515166 tatctaagagaatattgcttgctttgagatcacgatgaataacacgcactcgagaatcctc 6515226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 51 - 219
Target Start/End: Original strand, 6497722 - 6497890
Alignment:
Q  51 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctctt 150  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||| |||||||| || ||||||||||||||||||| ||||||||||||||| ||||    
T  6497722 acttactaggttcccacaattctttttgtgttttcctgtgtttggtccacaccaaatagtcttgccatgccaaaatcagatatcttaggattcatttctt 6497821  T
Q  151 catccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt 219  Q
    |||| |||||||| || |||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  6497822 catctaagagaatgttacttgctttgagatcacgatgaataatgcgcagtcgagaatcctcgtgaaggt 6497890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 51 - 219
Target Start/End: Complemental strand, 6525438 - 6525270
Alignment:
Q  51 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctctt 150  Q
    |||||||| |||||||||||||| ||||| |||||||| |||||||| ||| |||| || || |||||||||||||| ||||||||||||||||||||||    
T  6525438 acttactaggttcccacaattctgtttgtattttcctgagtttggtccacatcaaacagtctagccatgccaaaatctgctatcttaggattcatctctt 6525339  T
Q  151 catccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt 219  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| |||||||    
T  6525338 catctaagagaatattgcttgctttgagatcacgatgaataatacgcagccgagaatcctcatgaaggt 6525270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 217
Target Start/End: Complemental strand, 47771070 - 47770964
Alignment:
Q  111 cttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcct 210  Q
    |||||||  |||||||||| |||||||||||||||||| || || |||||||| ||||||||||||| |||||| || ||||  ||||| ||||||||||    
T  47771070 cttgccaatccaaaatcagatatcttaggattcatctcatcgtctaagagaatgttgcttgctttgatatcacggtgtataattcgtaggcgagaatcct 47770971  T
Q  211 cgtgaag 217  Q
    | |||||    
T  47770970 catgaag 47770964  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 219
Target Start/End: Original strand, 47711620 - 47711722
Alignment:
Q  117 atgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaa 216  Q
    |||||||| || | ||| |||||||||| || ||||||||||||||| || |||||||| ||||||||||| |||| ||| ||| |||||||||| ||||    
T  47711620 atgccaaagtctgatattttaggattcaacttttcatccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctcatgaa 47711719  T
Q  217 ggt 219  Q
    |||    
T  47711720 ggt 47711722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 219
Target Start/End: Original strand, 47744138 - 47744237
Alignment:
Q  120 ccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt 219  Q
    |||||||||| ||| |||||||||| || ||| ||||||||||| || |||||||| ||||||||||| |||| ||| ||| |||||||||  |||||||    
T  47744138 ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt 47744237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 47758515 - 47758620
Alignment:
Q  114 gccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgt 213  Q
    ||||| |||||||| | ||| |||||||||| || ||| || |||||||| || || ||||| ||||||||||| |||| ||| ||| ||||||||||||    
T  47758515 gccattccaaaatctgatattttaggattcaacttttcgtctaagagaatgttactcgctttaagatcacgatgtataatacgaagttgagaatcctcgt 47758614  T
Q  214 gaaggt 219  Q
    ||||||    
T  47758615 gaaggt 47758620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 47701359 - 47701443
Alignment:
Q  108 agccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataa 192  Q
    ||||| ||||| |||||||| | ||| ||||||||||| | ||||||||||||||| || |||||||| ||||||||||| ||||    
T  47701359 agcctggccataccaaaatctgatattttaggattcattttttcatccaagagaatgttacttgctttaagatcacgatgtataa 47701443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 217
Target Start/End: Complemental strand, 47775020 - 47774854
Alignment:
Q  51 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctctt 150  Q
    |||||||| ||||| |||||| || |||| ||| | || ||||| |||| | |||| |  || ||||  |||||||| | ||| |||||||||||| | |    
T  47775020 acttactaggttccaacaattttacttgtatttccttgagtttgatcaataacaaacaatctcgccaatccaaaatcggatattttaggattcatcccgt 47774921  T
Q  151 catccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaag 217  Q
    | || |||||||||||||| |||||||||||||| || ||||  || || ||||||||||| |||||    
T  47774920 cgtctaagagaatattgctagctttgagatcacggtgtataatgcggaggcgagaatcctcatgaag 47774854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 47640715 - 47640635
Alignment:
Q  112 ttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataa 192  Q
    ||||||| |||||||| |  ||||| || ||||| | |||||| || |||| |||||| ||||||||||||||||||||||    
T  47640715 ttgccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 47640635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 28828947 - 28829113
Alignment:
Q  51 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctctt 150  Q
    |||||||| ||||| ||||||||| |||| ||| | || ||||| || |||  ||  || ||||||||||||||||| |||||||||| |||||| |||     
T  28828947 acttactaggttccaacaattctacttgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcatgtctc 28829046  T
Q  151 catccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaag 217  Q
    |||| |||||||| ||||||||||| |||||||| || ||||  |||||||||||||| || |||||    
T  28829047 catctaagagaatgttgcttgctttaagatcacggtgtataatgcgtagtcgagaatcttcatgaag 28829113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 28854608 - 28854774
Alignment:
Q  51 acttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatctctt 150  Q
    |||||||||||||| ||||  ||| |||| ||||| || ||||| || |||  ||  || ||||||||||| ||||| | |||||||| |||||| | ||    
T  28854608 acttactaagttccaacaacactacttgtattttcttgtgtttgatccacaagaattagtcttgccatgccgaaatctgatatcttagcattcatgtttt 28854707  T
Q  151 catccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaag 217  Q
    |||| ||||||||||||| ||||||||||||||| || ||||  ||||||||||||||||| |||||    
T  28854708 catctaagagaatattgcctgctttgagatcacggtgtataatgcgtagtcgagaatcctcatgaag 28854774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 27368659 - 27368765
Alignment:
Q  111 cttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcct 210  Q
    |||||||  |||||||| | ||||||||||||||||||||| || || |||||||||||||||||||||||||| || ||||  || |  ||||||||||    
T  27368659 cttgccaatccaaaatcggatatcttaggattcatctcttcgtctaaaagaatattgcttgctttgagatcacggtgtataatgcgcaagcgagaatcct 27368758  T
Q  211 cgtgaag 217  Q
    |||||||    
T  27368759 cgtgaag 27368765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 28860026 - 28860134
Alignment:
Q  111 cttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcct 210  Q
    ||||||||||||||||| |  ||||||| |||||| ||||| || | |||||| ||||||||||||||||| || || |||| ||| |||||||||||||    
T  28860026 cttgccatgccaaaatctgaaatcttagcattcatgtcttcgtctaggagaatgttgcttgctttgagatcgcggtgtataatacgcagtcgagaatcct 28860125  T
Q  211 cgtgaaggt 219  Q
    | |||||||    
T  28860126 catgaaggt 28860134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 28874533 - 28874666
Alignment:
Q  48 aacacttactaagttcccacaattctatttgtgttttcctgggtttggtcaacaccaaaaagccttgccatgccaaaatcagctatcttaggattcatct 147  Q
    ||||||||||| ||| | |||| |||| |||| ||| | |||||||| || |||  || ||| ||||||||||||||||| |  ||||||| |||||  |    
T  28874533 aacacttactaggtttcaacaactctacttgtatttgcttgggtttgatccacaagaataagtcttgccatgccaaaatctgagatcttagcattcacgt 28874632  T
Q  148 cttcatccaagagaatattgcttgctttgagatc 181  Q
    |||| || |||||||| |||||||||||||||||    
T  28874633 cttcgtctaagagaatgttgcttgctttgagatc 28874666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 120 - 219
Target Start/End: Complemental strand, 11224890 - 11224791
Alignment:
Q  120 ccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataacacgtagtcgagaatcctcgtgaaggt 219  Q
    |||||||||| ||| |||||||||| || ||| ||||||||||| || |||||||| ||||||||||| |||| ||| ||| |||||||||  |||||||    
T  11224890 ccaaaatcagatattttaggattcaacttttcgtccaagagaatgttacttgctttaagatcacgatgtataatacgaagttgagaatcctgatgaaggt 11224791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 3094956 - 3094891
Alignment:
Q  110 ccttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgcttt 175  Q
    ||||||||  |||||||||| ||| || ||||||||||||| ||| ||||||| ||| ||||||||    
T  3094956 ccttgccaatccaaaatcagatatttttggattcatctcttgatctaagagaacattacttgcttt 3094891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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