View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5829_low_22 (Length: 230)
Name: NF5829_low_22
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5829_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 24463164 - 24463303
Alignment:
| Q |
1 |
caagaatatttcaatgtaaccattagattttcagtgtagccacactcattgaaaaatatgttatatatatagatgcacaaaagatatcagtgtgtatgca |
100 |
Q |
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| T |
24463164 |
caagaatatttcaatgtaaccattaggttttcagtgtagccacactcattgaaaaatatgttatatatatagatgcacaaaagatatcagtgtgtatgca |
24463263 |
T |
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| Q |
101 |
ttcagctaaaagggaaaagaaatagtaataagagaaagta |
140 |
Q |
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| T |
24463264 |
tttagctcaaagggaaaagtaatagtaataatagaaagta |
24463303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 24463346 - 24463381
Alignment:
| Q |
179 |
acatatggagtggcaaaaatattatatggatataat |
214 |
Q |
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| T |
24463346 |
acatatggagtggcaaaaatactatatggatataat |
24463381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 211
Target Start/End: Original strand, 24448665 - 24448695
Alignment:
| Q |
181 |
atatggagtggcaaaaatattatatggatat |
211 |
Q |
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| T |
24448665 |
atatggagtggcaaaaatattatatggatat |
24448695 |
T |
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