View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5829_low_24 (Length: 214)

Name: NF5829_low_24
Description: NF5829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5829_low_24
NF5829_low_24
[»] chr7 (2 HSPs)
chr7 (3-214)||(7174100-7174302)
chr7 (54-139)||(32651918-32652003)
[»] chr3 (3 HSPs)
chr3 (52-135)||(16973044-16973127)
chr3 (80-139)||(55048227-55048286)
chr3 (65-135)||(34145669-34145739)
[»] chr5 (1 HSPs)
chr5 (52-139)||(10161331-10161418)
[»] chr8 (3 HSPs)
chr8 (61-139)||(14578360-14578438)
chr8 (54-139)||(35063690-35063775)
chr8 (69-141)||(1098781-1098853)
[»] chr4 (2 HSPs)
chr4 (54-116)||(33632819-33632881)
chr4 (61-139)||(2321808-2321886)
[»] chr2 (1 HSPs)
chr2 (55-139)||(32006508-32006592)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 7174302 - 7174100
Alignment:
Q  3 ctacactgataataatttaaaaaaggaaaatgctaactagtagggacgttagttatggaaaccaaatatagtatgaatatcttggaatttgtgctgtcaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  7174302 ctacactgataataatttaaaaaaggaaaatgctaactagtagggacattagttatggaaaccaaatatagtatgaatatcttggaacttgtgccgtcaa 7174203  T
Q  103 agttttaaaagtgttaaaaattaagttttcaatgcaattataagtgtggtagttaaataggttagttagtatatctccaataatcaatttcaattccaaa 202  Q
    ||||||         |||||| ||||||||||||||||||||||||| | || || |||||||||||||||||||||| |||||||| ||||||||||||    
T  7174202 agtttt---------aaaaatgaagttttcaatgcaattataagtgtaggagctacataggttagttagtatatctcccataatcaaattcaattccaaa 7174112  T
Q  203 aacaaatcacac 214  Q
    ||||||||||||    
T  7174111 aacaaatcacac 7174100  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 32652003 - 32651918
Alignment:
Q  54 gttatggaaaccaaatatagtatgaatatcttggaatttgtgctgtcaaagttttaaaagtgttaaaaattaagttttcaatgcaa 139  Q
    |||| |||||||||||||||||| | | ||||| || |||||  |||||||||| |||||| | || ||| | |||||||||||||    
T  32652003 gttaaggaaaccaaatatagtataagtgtcttgaaacttgtgtagtcaaagtttaaaaagtataaataatgatgttttcaatgcaa 32651918  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 16973127 - 16973044
Alignment:
Q  52 tagttatggaaaccaaatatagtatgaatatcttggaatttgtgctgtcaaagttttaaaagtgttaaaaattaagttttcaat 135  Q
    |||||| |||||||||||||||||| | |||||||||| |||||  |||||||||| |||||||| || ||||| |||||||||    
T  16973127 tagttaaggaaaccaaatatagtataagtatcttggaacttgtgtagtcaaagtttaaaaagtgtaaagaattatgttttcaat 16973044  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 55048227 - 55048286
Alignment:
Q  80 tatcttggaatttgtgctgtcaaagttttaaaagtgttaaaaattaa-gttttcaatgcaa 139  Q
    ||||||||||||||||  |||||||||||||||||  |||||||||| |||||||||||||    
T  55048227 tatcttggaatttgtgtagtcaaagttttaaaagt-ataaaaattaatgttttcaatgcaa 55048286  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 34145739 - 34145669
Alignment:
Q  65 caaatatagtatgaatatcttggaatttgtgctgtcaaagttttaaaagtgttaaaaattaagttttcaat 135  Q
    |||||||||||||||||||||| ||||  ||   ||||||||| |||||||| |||||| | |||||||||    
T  34145739 caaatatagtatgaatatcttgaaattcttgtaatcaaagtttaaaaagtgtaaaaaatgatgttttcaat 34145669  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 10161418 - 10161331
Alignment:
Q  52 tagttatggaaaccaaatatagtatgaatatcttggaatttgtgctgtcaaagttttaaaagtgttaaaaattaagttttcaatgcaa 139  Q
    |||||| |||||||||||||||||| | || ||||||| |||||   ||||||||| |||||||| |||||| | |||||||||||||    
T  10161418 tagttaaggaaaccaaatatagtataagtaccttggaacttgtgtaatcaaagtttaaaaagtgtaaaaaatgatgttttcaatgcaa 10161331  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 14578360 - 14578438
Alignment:
Q  61 aaaccaaatatagtatgaatatcttggaatttgtgctgtcaaagttttaaaagtgttaaaaattaagttttcaatgcaa 139  Q
    |||| |||||||||||||||||||| ||| |||||| || |||||||||||||||| ||| || | ||||| |||||||    
T  14578360 aaactaaatatagtatgaatatcttagaacttgtgcagttaaagttttaaaagtgtaaaagatgatgttttaaatgcaa 14578438  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 35063690 - 35063775
Alignment:
Q  54 gttatggaaaccaaatatagtatgaatatcttggaatttgtgctgtcaaagttttaaaagtgttaaaaattaagttttcaatgcaa 139  Q
    |||| |||||||||||||||||| | || ||||||| |||||  |||||||||| |||||||| || ||  | |||||||||||||    
T  35063690 gttaaggaaaccaaatatagtataagtaccttggaacttgtgtagtcaaagtttcaaaagtgtaaagaaagatgttttcaatgcaa 35063775  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 1098853 - 1098781
Alignment:
Q  69 tatagtatgaatatcttggaatttgtgctgtcaaagttttaaaagtgttaaaaattaagttttcaatgcaatt 141  Q
    |||||||| | |||||| |||||| ||  |||||||||| |||||||| ||||| || |||||||||||||||    
T  1098853 tatagtataattatcttagaatttatgtagtcaaagtttaaaaagtgtaaaaaaatatgttttcaatgcaatt 1098781  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 33632819 - 33632881
Alignment:
Q  54 gttatggaaaccaaatatagtatgaatatcttggaatttgtgctgtcaaagttttaaaagtgt 116  Q
    |||| |||||||||||||||||| | || |||| ||||||||| |||||||||| ||||||||    
T  33632819 gttaaggaaaccaaatatagtataagtaccttgaaatttgtgcagtcaaagtttaaaaagtgt 33632881  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 2321808 - 2321886
Alignment:
Q  61 aaaccaaatatagtatgaatatcttggaatttgtgctgtcaaagttttaaaagtgttaaaaattaagttttcaatgcaa 139  Q
    |||| ||||||||||| | |||||||||| |||||  || ||||||| |||||||| ||| || | |||||||||||||    
T  2321808 aaactaaatatagtataagtatcttggaacttgtgtggtgaaagtttaaaaagtgtaaaagatgatgttttcaatgcaa 2321886  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 139
Target Start/End: Complemental strand, 32006592 - 32006508
Alignment:
Q  55 ttatggaaaccaaatatagtatgaatatcttggaatttgtgctgtcaaagttttaaaagtgttaaaaattaagttttcaatgcaa 139  Q
    |||||||||||||||||||||| | || |||  || |||||  |||||||||| |||||||| || ||| |  ||||||||||||    
T  32006592 ttatggaaaccaaatatagtataagtaccttataacttgtgtagtcaaagtttaaaaagtgtaaagaatgatattttcaatgcaa 32006508  T

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