View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5830-Insertion-1 (Length: 723)
Name: NF5830-Insertion-1
Description: NF5830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5830-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Complemental strand, 54984906 - 54984473
Alignment:
| Q |
7 |
caaacattatgtgaaactctaatcccgattatcacaataaactagtcatatttatcaacnnnnnnnn-gtgtcctataccactcaattttgtggcttatt |
105 |
Q |
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| T |
54984906 |
caaacattatgtgaaactctaatcccgattatcacaataaactagtcatatttatcaacaaaaaaaaagtgtcctataccactcaattttgtggcttatt |
54984807 |
T |
|
| Q |
106 |
aagaagcaaggtgcctgaaaaattaccaagattcaacaatatctatcctcggtgagaaaatcatagaaagatacagcacatccattttgtggtgtacttc |
205 |
Q |
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| T |
54984806 |
aagaagcaaggtgcctgaaaaattaccaagattcaacaatatctatcctcggcgagaaaattatagaaagatacagcacttccattttgtggtgtacttc |
54984707 |
T |
|
| Q |
206 |
agaagccacaacacacattttatttggttttcattctcttacatttcacaatttgnnnnnnncaacaataaatttattaatgatcaaatctttgcacaca |
305 |
Q |
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| T |
54984706 |
agaagccacaacacacattttatttggttttcattctcttacatttcacaatttgttttttt-aacaataaatttattaatgatcaaatctttgcatacg |
54984608 |
T |
|
| Q |
306 |
acgaactaaaactggaaagacaaaaagtacataacaacttgcaccaaaggaggagcatccaagagaaaattcaaacaccatacaacataaacaccaataa |
405 |
Q |
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| T |
54984607 |
acgaactaaaactggaaagataaaaagtacataacaacttgcgccaaaggaggagcatccaagagaaaattcaaacaccatacaacataaacaccaataa |
54984508 |
T |
|
| Q |
406 |
aaacacgactcaacaaaaggtaccaccaacacgaa |
440 |
Q |
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| T |
54984507 |
aaacacgactcaacaaaaggtaccaccaacacgaa |
54984473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 502 - 723
Target Start/End: Complemental strand, 54984411 - 54984190
Alignment:
| Q |
502 |
tttcaagaaattctgataagcatttgattaaattttgcattgatcaattggtcttccgtagggagaaatctttggatacaaaatagcataatctttcaca |
601 |
Q |
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| T |
54984411 |
tttcaagaaattctgataagcatttgattaaattttgcattgatcaattggtcttccgtaaggagaaatctttggatacaaaatagcataatctttcaca |
54984312 |
T |
|
| Q |
602 |
gttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataactactgtgagccttt |
701 |
Q |
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| T |
54984311 |
gttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataactactgtgagccttt |
54984212 |
T |
|
| Q |
702 |
ccttttctgaatctaccactgc |
723 |
Q |
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| T |
54984211 |
ccttttctgaatctaccactgc |
54984190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 585 - 721
Target Start/End: Original strand, 31320337 - 31320473
Alignment:
| Q |
585 |
tagcataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcat |
684 |
Q |
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| T |
31320337 |
tagcataatcttttactggtttgtataatactggccttgactcgttcactagtttgtcaatcggttgaatctctttctctgaatttgggcggcaaaacat |
31320436 |
T |
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| Q |
685 |
aactactgtgagcctttccttttctgaatctaccact |
721 |
Q |
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| | |||| |||||||||| |||||| || ||||||| |
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| T |
31320437 |
agcaactgagagcctttccctttctgcatttaccact |
31320473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 589 - 723
Target Start/End: Original strand, 31326377 - 31326511
Alignment:
| Q |
589 |
ataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataact |
688 |
Q |
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| T |
31326377 |
ataatcttttactggtctgtatgataatggccttgactcgttcactagtttgtcaatcggttgaatctctttctccgaatctgggcggcataacatagct |
31326476 |
T |
|
| Q |
689 |
actgtgagcctttccttttctgaatctaccactgc |
723 |
Q |
| |
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|||| ||||||| |||||||| || ||||||||| |
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| T |
31326477 |
actgagagccttgccttttcttcatttaccactgc |
31326511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 31320213 - 31320256
Alignment:
| Q |
212 |
cacaacacacattttatttggttttcattctcttacatttcaca |
255 |
Q |
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| T |
31320213 |
cacaacacacattttatttcgttttcattctctttcatctcaca |
31320256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 31326250 - 31326283
Alignment:
| Q |
212 |
cacaacacacattttatttggttttcattctctt |
245 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
31326250 |
cacaacacacattttatttcgttttcattctctt |
31326283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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