View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5830-Insertion-2 (Length: 505)
Name: NF5830-Insertion-2
Description: NF5830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5830-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 425
Target Start/End: Original strand, 4474285 - 4474699
Alignment:
| Q |
9 |
ttgacaacaaacaaaacaaattttcaaacaactatctaagatggaaagaagctattcttggagctttcaatgttatggatgaggaggtgaagaaacaaga |
108 |
Q |
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| T |
4474285 |
ttgacaacaaacaaaacaaattttcaaacaactatctaagatggaaagaagctattcttggagctttcaatgtaatggatgaggaggtgaagaaacaaga |
4474384 |
T |
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| Q |
109 |
gaatctagattgttcttgtagtggaaccactgctgtagttgtcataagacaggtaaataaactttgatataaagatttagcaattcannnnnnnnatctt |
208 |
Q |
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| T |
4474385 |
gaatctagattgttcttgtagtggaaccactgctgtagttgtcataagacaggtaaataaactttgatatatagatttagcaattcatttttt--atctt |
4474482 |
T |
|
| Q |
209 |
tgttaaggaaaatatgataacaaaagaacaataaaatcagggtgaaggtcttgtcatagttaaccttggtgactcaagagcaatattaggaacaatccaa |
308 |
Q |
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| T |
4474483 |
tgttaaggaaaatatgataacaaaagaacaataaaatcagggtgaaggtcttgtcatagttaaccttggtgactcaagagcaatattaggaacaatccaa |
4474582 |
T |
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| Q |
309 |
gatgaaaaactcaaagccattcaattgaccactgatttgaagcctggtttgccttgtaagattcttctcataaactaactaccatgcagcttcttttcaa |
408 |
Q |
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| T |
4474583 |
gatgaaaaactcaaagccattcaattaaccactgatttgaagcctggtttgccttgtaagattcctctcataaactaactaccatgcagcttcttttcaa |
4474682 |
T |
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| Q |
409 |
gtattggtttgacggaa |
425 |
Q |
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| T |
4474683 |
gtattggtttgacggaa |
4474699 |
T |
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