View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5830_high_1 (Length: 533)
Name: NF5830_high_1
Description: NF5830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5830_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 95 - 511
Target Start/End: Complemental strand, 4474699 - 4474285
Alignment:
| Q |
95 |
ttccgtcaaaccaatacttgaaaagaagctgcatggtagttagtttatgagaagaatcttacaaggcaaaccaggcttcaaatcagtggtcaattgaatg |
194 |
Q |
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| T |
4474699 |
ttccgtcaaaccaatacttgaaaagaagctgcatggtagttagtttatgagaggaatcttacaaggcaaaccaggcttcaaatcagtggttaattgaatg |
4474600 |
T |
|
| Q |
195 |
gctttgagtttttcatcttggattgttcctaatattgctcttgagtcaccaaggttaactatgacaagaccttcaccctgattttattgttcttttgtta |
294 |
Q |
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| T |
4474599 |
gctttgagtttttcatcttggattgttcctaatattgctcttgagtcaccaaggttaactatgacaagaccttcaccctgattttattgttcttttgtta |
4474500 |
T |
|
| Q |
295 |
tcatattttccttaacaaagatnnnnnnnntgaattgctaaatctttatatcaaagtttatttacctgtcttatgacaactacagcagtggttccactac |
394 |
Q |
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| T |
4474499 |
tcatattttccttaacaaagat--aaaaaatgaattgctaaatctatatatcaaagtttatttacctgtcttatgacaactacagcagtggttccactac |
4474402 |
T |
|
| Q |
395 |
aagaacaatctagattctcttgtttcttcacctcctcatccataacattgaaagctccaagaatagcttctttccatcttagatagttgtttgaaaattt |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4474401 |
aagaacaatctagattctcttgtttcttcacctcctcatccattacattgaaagctccaagaatagcttctttccatcttagatagttgtttgaaaattt |
4474302 |
T |
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| Q |
495 |
gttttgtttgttgtcaa |
511 |
Q |
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| T |
4474301 |
gttttgtttgttgtcaa |
4474285 |
T |
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